Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV32030
         (663 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      23   2.6  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    22   4.5  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     22   4.5  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    22   4.5  
U15955-1|AAA67443.1|   95|Apis mellifera defensin precursor prot...    22   6.0  
AY496432-1|AAS75803.1|   95|Apis mellifera defensin/royalisin pr...    22   6.0  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   7.9  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   7.9  

>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 11/32 (34%), Positives = 14/32 (43%)
 Frame = +2

Query: 470 FAGITEILDLDGPTRRRSRSIPQHLSHEHRPQ 565
           F+  T ++DL  P   R   I Q   H H  Q
Sbjct: 49  FSPSTHLMDLSSPPEHRDLPIYQSHHHLHHHQ 80


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +3

Query: 234 GPVIWSYFAEFQP 272
           G V+W  F +FQP
Sbjct: 263 GQVLWEGFGDFQP 275


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +3

Query: 234 GPVIWSYFAEFQP 272
           G V+W  F +FQP
Sbjct: 263 GQVLWEGFGDFQP 275


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 11/35 (31%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
 Frame = +1

Query: 376 EDRPGASCTILGGYF--CWLCHCLHSWWRLYCSFC 474
           E +   +  I+ G F  CWL   + + W  +CS C
Sbjct: 330 EKKAAKTLGIVMGVFIICWLPFFVVNLWSGFCSQC 364


>U15955-1|AAA67443.1|   95|Apis mellifera defensin precursor
           protein.
          Length = 95

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = +2

Query: 167 LQSELRALHVLPLRERCRLGRVGTCDLVVFRG 262
           ++ E   L      ER    R  TCDL+ F+G
Sbjct: 22  VEDEFEPLEHFENEERADRHRRVTCDLLSFKG 53


>AY496432-1|AAS75803.1|   95|Apis mellifera defensin/royalisin
           precursor protein.
          Length = 95

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = +2

Query: 167 LQSELRALHVLPLRERCRLGRVGTCDLVVFRG 262
           ++ E   L      ER    R  TCDL+ F+G
Sbjct: 22  VEDEFEPLEHFENEERADRHRRVTCDLLSFKG 53


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 8/30 (26%), Positives = 18/30 (60%)
 Frame = +3

Query: 342 GLAWVIIPSEIGGSTGGFVYNSWRIFLLVM 431
           GLA+++ PS +    G  +++    F+L++
Sbjct: 357 GLAFLVYPSAVLELPGSSIWSCLFFFMLIL 386


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 8/30 (26%), Positives = 18/30 (60%)
 Frame = +3

Query: 342 GLAWVIIPSEIGGSTGGFVYNSWRIFLLVM 431
           GLA+++ PS +    G  +++    F+L++
Sbjct: 410 GLAFLVYPSAVLELPGSSIWSCLFFFMLIL 439


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 180,897
Number of Sequences: 438
Number of extensions: 3668
Number of successful extensions: 13
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19977660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)