Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV32028
         (731 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_07_0067 - 40857544-40858164,40858265-40858370,40858541-408586...    29   5.0  
05_05_0257 + 23651353-23651733,23651827-23651958                       28   6.6  

>01_07_0067 -
           40857544-40858164,40858265-40858370,40858541-40858659,
           40859195-40859392,40859659-40859724,40859798-40859916,
           40860295-40860580
          Length = 504

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +3

Query: 597 RAGDWGFAIIPHKRGIPSKRES*ARVDYVLPFVHTG 704
           R+ D G  + P KRG+         +  V+PFVHTG
Sbjct: 246 RSKDGGKTVAPAKRGVGRLVMDADSLPVVIPFVHTG 281


>05_05_0257 + 23651353-23651733,23651827-23651958
          Length = 170

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = -2

Query: 661 DSRLLGIPRLWGIIANPQSPARRKFSGLPGPLGQGEHADS 542
           +  L G P L      PQ+P RR+ +G+P P+  G + +S
Sbjct: 2   EDELGGAPLLHEPPPPPQTPPRRRRTGVPVPILHGNNCNS 41


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,060,343
Number of Sequences: 37544
Number of extensions: 355812
Number of successful extensions: 784
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 759
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 783
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1921741964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)