Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV32028
         (731 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            24   1.7  
AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        22   5.2  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   5.2  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        21   9.0  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        21   9.0  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        21   9.0  

>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = +1

Query: 601 LGIGGLQLSPINEEFLV 651
           +G GG+Q+SP+ E  ++
Sbjct: 55  VGFGGVQVSPVQENIVI 71


>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 14/53 (26%), Positives = 21/53 (39%)
 Frame = -3

Query: 609 NPQHEGSSAGCPGL*ARENMLIPSV*RACGPGHLRASQTCYCSISCGSKTPVP 451
           +PQH GSSA         + + P V  A    H +  Q    +    + + VP
Sbjct: 68  SPQHSGSSASTSPAARTTSSMYPYVSAAAAHHHHQQQQAVAAAAFGATSSMVP 120


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +3

Query: 543 ESACSPWPRGPGNPLNFLRA 602
           + + SP PR P NP+  L+A
Sbjct: 13  DRSTSPLPRKPVNPVQELKA 32


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 9/10 (90%), Positives = 9/10 (90%)
 Frame = +1

Query: 280 GKKETDVVAV 309
           GKKE DVVAV
Sbjct: 76  GKKEADVVAV 85


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 9/10 (90%), Positives = 9/10 (90%)
 Frame = +1

Query: 280 GKKETDVVAV 309
           GKKE DVVAV
Sbjct: 76  GKKEADVVAV 85


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 9/10 (90%), Positives = 9/10 (90%)
 Frame = +1

Query: 280 GKKETDVVAV 309
           GKKE DVVAV
Sbjct: 76  GKKEADVVAV 85


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 180,340
Number of Sequences: 438
Number of extensions: 3418
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22779405
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)