Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV32027
         (432 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC776.03 |||homoserine dehydrogenase |Schizosaccharomyces pomb...    27   0.93 
SPCC553.02 |||glutamine-dependent NAD|Schizosaccharomyces pombe|...    25   3.8  
SPAC167.02 |ptb1||geranylgeranyltransferase II beta subunit |Sch...    25   3.8  
SPAC9.12c |atp12||F1-ATPase chaperone Atp12 |Schizosaccharomyces...    25   3.8  
SPBC365.12c |ish1||LEA domain protein|Schizosaccharomyces pombe|...    25   5.0  
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s...    25   6.6  

>SPBC776.03 |||homoserine dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 376

 Score = 27.5 bits (58), Expect = 0.93
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = +3

Query: 99  SSNTDKNVAFLGLGNMGGFMAANLVKKGFTVRGYDPSKDALNAAA 233
           +S T+ NVA +G GN+GG +   +  KGF          + N  A
Sbjct: 3   ASRTNVNVAIVGTGNIGGELLNQI--KGFNENASTNGTTSFNVVA 45


>SPCC553.02 |||glutamine-dependent NAD|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 700

 Score = 25.4 bits (53), Expect = 3.8
 Identities = 9/29 (31%), Positives = 14/29 (48%)
 Frame = +1

Query: 91  GRIVLTPTRMWLSSASETWEDSWLRTWLK 177
           G+I+L   ++WL       E  W   WL+
Sbjct: 106 GKILLIRPKIWLCDDGNFRESRWFTPWLR 134


>SPAC167.02 |ptb1||geranylgeranyltransferase II beta subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 311

 Score = 25.4 bits (53), Expect = 3.8
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +1

Query: 325 STCTWAKMALWLMRKKDRF*SIRV 396
           S   W+ M+ WL++KKD+    R+
Sbjct: 34  SAIYWSCMSFWLLKKKDQIDKERI 57


>SPAC9.12c |atp12||F1-ATPase chaperone Atp12 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 287

 Score = 25.4 bits (53), Expect = 3.8
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = -1

Query: 297 KRPRRLHQRLQQWSWLASLRSWPL 226
           K+ +  H+R++  +WL+SL SW L
Sbjct: 186 KQTQETHERIR--NWLSSLNSWQL 207


>SPBC365.12c |ish1||LEA domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 684

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +1

Query: 139 ETWEDSWLRTWLKRV 183
           +TW D+ LRTWL  V
Sbjct: 188 DTWSDNELRTWLHDV 202


>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
           subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 390

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 14/52 (26%), Positives = 25/52 (48%)
 Frame = +1

Query: 10  AKLSKKQIQNGRAHNIKHSVFVHSRQYGRIVLTPTRMWLSSASETWEDSWLR 165
           A+L   +++   A   +H+VF+       I+     MW+S A   WE+  +R
Sbjct: 331 ARLPNFKVKIEDAPRRRHAVFIGGAVLADIMAQNDHMWVSKAE--WEEYGVR 380


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,889,980
Number of Sequences: 5004
Number of extensions: 37808
Number of successful extensions: 103
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 154067960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)