Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV32027
(432 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_1118 + 27756288-27756337,27756505-27756619,27756883-277570... 49 1e-06
06_01_1052 + 8312752-8312862,8312969-8313041,8313285-8313362,831... 48 2e-06
02_04_0261 + 21363787-21363891,21364185-21364286,21365854-213659... 34 1e-04
01_05_0431 - 22084474-22084635,22084740-22084844,22084931-220850... 42 2e-04
01_06_0663 - 30991390-30992340 36 0.011
02_02_0184 - 7581345-7581769,7581880-7582296,7582891-7583661,758... 31 0.40
05_07_0134 - 27911920-27912762 30 0.70
04_01_0035 - 433848-434372,434905-435381 29 1.6
06_02_0014 + 10585888-10586422,10586621-10586652,10587127-10587216 29 2.1
06_03_1344 - 29472139-29473292,29474478-29475386,29475504-294756... 28 2.8
11_06_0743 + 26847652-26849424 28 3.7
01_06_0210 - 27559090-27559239,27560445-27560567,27561069-275611... 28 3.7
11_05_0081 - 18924353-18924462,18925068-18925187,18925569-189260... 27 6.5
10_05_0038 - 8458901-8459207,8459367-8459705,8459710-8459913,846... 27 6.5
09_06_0365 - 22582467-22583524,22584407-22584641,22585474-225856... 27 8.6
06_03_1478 - 30420097-30420651 27 8.6
>06_03_1118 +
27756288-27756337,27756505-27756619,27756883-27757033,
27757219-27757301,27757424-27757519,27757615-27757757,
27757858-27757942,27758158-27758237,27758335-27758422
Length = 296
Score = 49.2 bits (112), Expect = 1e-06
Identities = 31/92 (33%), Positives = 51/92 (55%), Gaps = 2/92 (2%)
Frame = +3
Query: 156 MAANLVKKGFTVRGYDPSKDALNAAAKNGVTPANSIXXXXXXXXXXXSILTSNKVVLDVY 335
MA NLV G+ V +D +++ + + +G+ S ++L S+ VLDVY
Sbjct: 1 MARNLVMAGYKVTVHDVNENTMKKFSDDGIPTKLSPLEVSKSSDVVITMLPSSAHVLDVY 60
Query: 336 LGKDGVVAHAK-KGSXL-IDSSTIDPNVSKQI 425
G++G++A+ G L IDSST+DP S++I
Sbjct: 61 NGRNGLLANGGCLGPWLYIDSSTVDPQTSRKI 92
>06_01_1052 +
8312752-8312862,8312969-8313041,8313285-8313362,
8313443-8313523,8313706-8313779,8313865-8313919,
8314031-8314079,8314222-8314359,8314455-8314536,
8315131-8315209,8315357-8315400,8315479-8315673,
8316110-8316185,8317427-8317507,8317623-8317703,
8318128-8318204,8318402-8318499,8318672-8318809,
8319397-8319478,8319564-8319642,8319885-8319931,
8320014-8320228,8320330-8320450,8320529-8320648,
8320731-8320849,8320964-8321036,8321112-8321231,
8321538-8321606,8321756-8321926,8322004-8322051,
8322192-8322333,8323244-8323341,8323684-8323828,
8323928-8324013,8324112-8324222,8324456-8324530,
8324836-8324901,8325036-8325224,8325315-8325425,
8326616-8326696,8327192-8327371
Length = 1385
Score = 48.4 bits (110), Expect = 2e-06
Identities = 34/101 (33%), Positives = 49/101 (48%), Gaps = 1/101 (0%)
Frame = +3
Query: 108 TDKNVAFLGLGNMGGFMAANLVKKGFTVRGYDPSKDALNAAAKNGVTPANSIXXXXXXXX 287
T K + F+GLG MG MA++L+K GF+V YD K L G +S
Sbjct: 322 TAKTIGFIGLGAMGFGMASHLLKSGFSVIAYDVYKPTLARFTDLGGLTKDS-PEEVSKDV 380
Query: 288 XXXSILTSNKVVLD-VYLGKDGVVAHAKKGSXLIDSSTIDP 407
I+ +N+V + V G G V+ G+ +I SST+ P
Sbjct: 381 EILVIMVANEVQAENVLYGNAGAVSVMAAGTSIILSSTVSP 421
>02_04_0261 +
21363787-21363891,21364185-21364286,21365854-21365964,
21366233-21366334,21366901-21367016,21367180-21367258,
21367347-21367517,21367617-21367712
Length = 293
Score = 33.9 bits (74), Expect(2) = 1e-04
Identities = 16/24 (66%), Positives = 18/24 (75%)
Frame = +3
Query: 120 VAFLGLGNMGGFMAANLVKKGFTV 191
V FLGLG MG MAANL++ GF V
Sbjct: 3 VGFLGLGIMGKAMAANLLRHGFRV 26
Score = 28.3 bits (60), Expect(2) = 1e-04
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = +3
Query: 312 NKVVLDVYLGKDGVVAHAKKGSXLIDSSTIDPNVSKQI 425
N+ + V KDGV+ +G +D ST+D S +I
Sbjct: 30 NRTLSKVVFDKDGVLEQIGEGKGYVDMSTVDAATSCKI 67
>01_05_0431 -
22084474-22084635,22084740-22084844,22084931-22085003,
22085109-22085179,22085429-22085548,22085631-22085715,
22085812-22085867,22085978-22086053,22086546-22086611,
22086843-22087060
Length = 343
Score = 42.3 bits (95), Expect = 2e-04
Identities = 28/102 (27%), Positives = 43/102 (42%)
Frame = +3
Query: 120 VAFLGLGNMGGFMAANLVKKGFTVRGYDPSKDALNAAAKNGVTPANSIXXXXXXXXXXXS 299
V FLGLG MG MA+NL+ G V ++ ++ + G S +
Sbjct: 53 VGFLGLGIMGAPMASNLINAGCDVTVWNRTRSKCDPLLSLGAKYEPSPADVASSCDVTFA 112
Query: 300 ILTSNKVVLDVYLGKDGVVAHAKKGSXLIDSSTIDPNVSKQI 425
+L + ++V G +G G +D ST+D SK I
Sbjct: 113 MLADPESAVEVACGANGAAQGMAPGKGYVDVSTVDAATSKLI 154
>01_06_0663 - 30991390-30992340
Length = 316
Score = 36.3 bits (80), Expect = 0.011
Identities = 29/113 (25%), Positives = 47/113 (41%), Gaps = 1/113 (0%)
Frame = +3
Query: 90 RAYSSNTDKNVAFLGLGNMGGFMAANLVKKGFTVRGYDPSKDALNAAAKNGVTPANSIXX 269
R S +T + VA++G G MG MA +L+ G+ + Y+ + G T A S
Sbjct: 13 RPISPDTTR-VAWVGTGVMGQSMAGHLLAAGYALTVYNRTASKAEGLVSRGATLAESPRA 71
Query: 270 XXXXXXXXXSILTSNKVVLDVYLGKD-GVVAHAKKGSXLIDSSTIDPNVSKQI 425
++ V L G +A G L+D +T DP ++ +I
Sbjct: 72 AAAAADVIFLMVGFPSDVRSTSLDPSTGALAGLAPGGLLVDMTTSDPTLAAEI 124
>02_02_0184 -
7581345-7581769,7581880-7582296,7582891-7583661,
7583894-7584437,7584794-7584961,7585019-7585101,
7585190-7585631
Length = 949
Score = 31.1 bits (67), Expect = 0.40
Identities = 17/48 (35%), Positives = 24/48 (50%)
Frame = +3
Query: 81 PPVRAYSSNTDKNVAFLGLGNMGGFMAANLVKKGFTVRGYDPSKDALN 224
P +R + D A+ N +A L+K+G RGYD SKD+ N
Sbjct: 226 PNLRDRIQSEDAKKAYFTRLNGSISVARRLLKQGLPFRGYDESKDSYN 273
>05_07_0134 - 27911920-27912762
Length = 280
Score = 30.3 bits (65), Expect = 0.70
Identities = 22/91 (24%), Positives = 40/91 (43%), Gaps = 1/91 (1%)
Frame = +3
Query: 156 MAANLVKKGFTVRGYDPSKDALNAAAKNGVTPANSIXXXXXXXXXXXSILTSNKVVLDVY 335
MAA L+ GF V Y + A G + A S +++ + V V
Sbjct: 1 MAARLLAAGFAVTAYARTPAKAEALVAAGASLAGSPAAVAAACDVVFTMVGNPGDVRAVV 60
Query: 336 L-GKDGVVAHAKKGSXLIDSSTIDPNVSKQI 425
L GV+A + G L+D ++ P++++++
Sbjct: 61 LDAASGVLAGLRPGGVLVDCTSSSPSLAREV 91
>04_01_0035 - 433848-434372,434905-435381
Length = 333
Score = 29.1 bits (62), Expect = 1.6
Identities = 24/105 (22%), Positives = 47/105 (44%), Gaps = 4/105 (3%)
Frame = +3
Query: 99 SSNTDKNVAFLGLGNMGGFMAANLVKKGFTVRGYDPSKDALNAAAKNGVTPANSIXXXXX 278
S + K+V +GLG++G +A L G T+ Y+ S+ ++ + N +
Sbjct: 158 SKLSGKHVGIIGLGSIGSLIAKRLQAFGCTI-SYN-SRRPKDSVSYNYFPDVTDLAAASD 215
Query: 279 XXXXXXSILTSNKVVLDVY----LGKDGVVAHAKKGSXLIDSSTI 401
++ + ++D LGKDGVV + +G + ++ I
Sbjct: 216 VLIVACALNDETRHIVDSSVLEALGKDGVVVNIARGGIVDEAELI 260
>06_02_0014 + 10585888-10586422,10586621-10586652,10587127-10587216
Length = 218
Score = 28.7 bits (61), Expect = 2.1
Identities = 16/40 (40%), Positives = 18/40 (45%)
Frame = -1
Query: 369 FSHEPQRHLCPGTRRARLYCWSIWKRPRRLHQRLQQWSWL 250
F E + G A L WS W R R +H R Q W WL
Sbjct: 68 FMQEEGGKVFTGRMCATLPWWSTW-RGRWIHLRDQPWLWL 106
>06_03_1344 -
29472139-29473292,29474478-29475386,29475504-29475618,
29476017-29476218,29477177-29477296,29477431-29477582,
29478177-29478461
Length = 978
Score = 28.3 bits (60), Expect = 2.8
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = +3
Query: 120 VAFLGLGNMGGFMAANLVKKGFTVRGYDPSKDALNAAAKNGVT 248
+A +G GN G F+A ++G T+ + S D + AA G +
Sbjct: 704 IAIVGFGNFGQFLARTFARQGHTLLAHSRS-DYSSLAASVGAS 745
>11_06_0743 + 26847652-26849424
Length = 590
Score = 27.9 bits (59), Expect = 3.7
Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Frame = -1
Query: 321 RLYCWSIWKRPRRLHQRLQQWSWLAS-LRSWPLRS 220
R + W+ KR RL +RL+Q W+A+ +R + RS
Sbjct: 94 RRWSWTRGKRTPRLPERLKQRLWMANKIREFSTRS 128
>01_06_0210 -
27559090-27559239,27560445-27560567,27561069-27561128,
27562045-27562068,27562313-27562653,27562684-27563731
Length = 581
Score = 27.9 bits (59), Expect = 3.7
Identities = 14/34 (41%), Positives = 22/34 (64%)
Frame = -1
Query: 129 GKPHSCRC*NYTPVLAAVYKH*VLNIVRAAILNL 28
G PHS R +YT VLAA+ H L++ R+ + ++
Sbjct: 133 GLPHSAR--SYTAVLAALVAHSHLSLARSLLADM 164
>11_05_0081 -
18924353-18924462,18925068-18925187,18925569-18926086,
18927392-18927471,18927680-18927782,18928084-18928295,
18928392-18929210,18929331-18929444,18929935-18929983,
18930115-18930271,18930354-18930807,18930938-18931147
Length = 981
Score = 27.1 bits (57), Expect = 6.5
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = +1
Query: 109 PTRMWLSSASETWEDSWLRTWL 174
P R W AS ED+W R W+
Sbjct: 370 PLRRWWRRASYFLEDNWRRVWV 391
>10_05_0038 -
8458901-8459207,8459367-8459705,8459710-8459913,
8460374-8460492
Length = 322
Score = 27.1 bits (57), Expect = 6.5
Identities = 13/48 (27%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = -1
Query: 345 LCPGTRRARLYCWSIWKRPRRLHQRLQQWSWLASLRSWPLRSVHL-WK 205
L T L C ++ + PRRL R + WS + ++P+ ++ + W+
Sbjct: 148 LSTATCEVSLPCATMVRMPRRLRWRSEPWSHMWPRMTFPIATLEIRWR 195
>09_06_0365 -
22582467-22583524,22584407-22584641,22585474-22585684,
22585775-22585848,22585943-22586092
Length = 575
Score = 26.6 bits (56), Expect = 8.6
Identities = 9/26 (34%), Positives = 13/26 (50%)
Frame = -1
Query: 357 PQRHLCPGTRRARLYCWSIWKRPRRL 280
P R+L G R ++ W W+ P L
Sbjct: 475 PMRNLSDGQRSRVIFAWLAWREPHML 500
>06_03_1478 - 30420097-30420651
Length = 184
Score = 26.6 bits (56), Expect = 8.6
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = +1
Query: 67 VFVHSRQYGRIVLTPTRMWLSSASETWEDSWLRTWLKRVSQFAA 198
VFVH G PT WLS S D + +W ++++ AA
Sbjct: 5 VFVHHLGGGSGGDDPTHPWLSLKSSHEMDDAVASWREKLADMAA 48
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,957,763
Number of Sequences: 37544
Number of extensions: 279461
Number of successful extensions: 866
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 855
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 865
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 814473264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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