Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV32024
         (380 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC10F6.02c |prp22||ATP-dependent RNA helicase Prp22|Schizosacc...    26   2.3  
SPBC12C2.04 |||NAD binding dehydrogenase family protein|Schizosa...    25   4.0  
SPBC27B12.01c |mmm1|SPBC30B4.09c|Mdm10/Mdm12/Mmm1 complex subuni...    24   7.0  
SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regula...    24   7.0  
SPAC1687.12c |coq4||ubiquinone biosynthesis protein Coq4|Schizos...    24   7.0  
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb...    24   9.3  
SPAC23A1.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    24   9.3  

>SPAC10F6.02c |prp22||ATP-dependent RNA helicase
            Prp22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1168

 Score = 25.8 bits (54), Expect = 2.3
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = +3

Query: 72   ALCKAYLLNIEKYI*HSYCHFSFQCSFPIYIY 167
            ALC  Y  N+ K   H  C+ +   + P+Y++
Sbjct: 1052 ALCSGYFTNVAKRDSHEGCYKTIVENAPVYMH 1083


>SPBC12C2.04 |||NAD binding dehydrogenase family
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 384

 Score = 25.0 bits (52), Expect = 4.0
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +3

Query: 300 YFFSNLKIIYVSKKISDDNNYTI 368
           Y F  LKI+  +KK   DNN  I
Sbjct: 166 YMFRYLKIVQAAKKYVADNNLNI 188


>SPBC27B12.01c |mmm1|SPBC30B4.09c|Mdm10/Mdm12/Mmm1 complex subunit
           Mmm1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 346

 Score = 24.2 bits (50), Expect = 7.0
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = +1

Query: 220 QSIVRVANNIYCTIAVAILINF 285
           + +V + +NI CT+   +L+NF
Sbjct: 171 EMLVSLTDNINCTVDTKLLLNF 192


>SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regulator
           protein Rif1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1400

 Score = 24.2 bits (50), Expect = 7.0
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = -1

Query: 206 STVMLHMLNQRLYINIYWKRTLKTEVTI 123
           S  ML +L   + +NI  K  LK EVTI
Sbjct: 459 SDAMLSLLWDSVIVNILEKCALKNEVTI 486


>SPAC1687.12c |coq4||ubiquinone biosynthesis protein
           Coq4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 272

 Score = 24.2 bits (50), Expect = 7.0
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = -1

Query: 185 LNQRLYINIYWKRTLKTEV 129
           LN +  IN+YW++ L  ++
Sbjct: 238 LNAKTLINVYWEKELTNDI 256


>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1778

 Score = 23.8 bits (49), Expect = 9.3
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +3

Query: 252 LYDSCGDSHKLST*AIYFFSNLKIIYVSKKISDDN 356
           L+DS  D   LS  A     N+K + ++ KIS D+
Sbjct: 719 LFDSLNDDVLLSADAFTPRQNIKKLVITHKISKDD 753


>SPAC23A1.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 251

 Score = 23.8 bits (49), Expect = 9.3
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +1

Query: 190 CSITVDWACDQSIVRVANNIYCTI 261
           C  T  +AC  S +++ NN+ C I
Sbjct: 213 CGHTYCYACIMSRLKLVNNVSCPI 236


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,449,371
Number of Sequences: 5004
Number of extensions: 27429
Number of successful extensions: 58
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 124270298
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)