Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV32024
         (380 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_1149 + 10789733-10791209,10791326-10791588,10791745-107919...    27   6.6  
05_01_0078 - 523366-525196,525622-525675,527135-529341                 27   6.6  
07_03_1418 - 26421341-26421527,26421618-26423157,26424293-26424524     26   8.7  
01_05_0347 + 21226612-21226857,21227623-21227787,21228183-212283...    26   8.7  

>07_01_1149 +
           10789733-10791209,10791326-10791588,10791745-10791954,
           10792398-10792475,10792505-10792705,10792768-10792908,
           10794749-10795714,10797824-10797919,10798450-10798638,
           10798849-10798956
          Length = 1242

 Score = 26.6 bits (56), Expect = 6.6
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = -2

Query: 106 FSIFSKYALHKALGLLRNSVRIIYRRAYYGIASFR 2
           FS  ++  + K LG+  N+VR+I RRA  G    R
Sbjct: 710 FSELAQNVISKCLGIPFNNVRVITRRAGGGFGGKR 744


>05_01_0078 - 523366-525196,525622-525675,527135-529341
          Length = 1363

 Score = 26.6 bits (56), Expect = 6.6
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +1

Query: 133  SVFNVRFQYIFIYKRWFSMCSITVDWACDQSIVRVAN 243
            ++FNV FQY  I  RW ++C    D + D+  V + N
Sbjct: 1158 NMFNVPFQYHGIASRWETIC--IEDLSIDKDEVLIIN 1192


>07_03_1418 - 26421341-26421527,26421618-26423157,26424293-26424524
          Length = 652

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
 Frame = -3

Query: 198 NAAHAKPTL--VYKYILETNIEN*SDNNYVKYIFLYLVSMLCIRH*AF*EIVFGLYI 34
           NA + K T   V+++I  T+  +   N+  KY    ++   C++H A  E++  LYI
Sbjct: 561 NAKYPKDTFDAVHRFISSTSGSSAIKNSRSKYQAAIVLKNQCLKHLALGEVLQILYI 617


>01_05_0347 +
           21226612-21226857,21227623-21227787,21228183-21228339,
           21228449-21228534,21228629-21228828,21229659-21229707,
           21229786-21229998,21230106-21230312,21230451-21230513,
           21230514-21230696
          Length = 522

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = +1

Query: 205 DWACDQSIVRVANNIYCT 258
           DW+C +S+  V +N++CT
Sbjct: 434 DWSCLKSMQLVCDNLFCT 451


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,105,381
Number of Sequences: 37544
Number of extensions: 132407
Number of successful extensions: 215
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 213
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 215
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 624784784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)