Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV32024
         (380 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    23   1.6  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    22   2.8  
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    20   8.5  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    20   8.5  

>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 22.6 bits (46), Expect = 1.6
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = +2

Query: 11  RDPIICPPIYNP 46
           RDPI+ PP  NP
Sbjct: 431 RDPILTPPSSNP 442


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 21.8 bits (44), Expect = 2.8
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -3

Query: 168 YKYILETNIEN*SDNNYVKY 109
           YKY    N  N ++NNY  Y
Sbjct: 322 YKYSNYNNYNNYNNNNYNNY 341


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 20.2 bits (40), Expect = 8.5
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = -2

Query: 73  ALGLLRNSVRIIY 35
           ALG +RN+ RI+Y
Sbjct: 252 ALGPIRNNDRILY 264


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 20.2 bits (40), Expect = 8.5
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -2

Query: 49  VRIIYRRAYYGIASF 5
           V IIY  + YGI +F
Sbjct: 283 VSIIYEESNYGIKAF 297


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 98,526
Number of Sequences: 438
Number of extensions: 2007
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  9300375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)