Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV32023
         (594 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC12B10.03 |||WD repeat protein, human WDR20 family|Schizosacc...    28   0.89 
SPAC13F5.05 |||thioredoxin family protein|Schizosaccharomyces po...    27   1.6  
SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|c...    27   1.6  
SPBC17D11.06 |spp2|pri2|DNA primase large subunit Spp2 |Schizosa...    26   4.8  
SPAC4H3.10c |pyk1||pyruvate kinase |Schizosaccharomyces pombe|ch...    25   6.3  
SPAC23D3.01 |||PWWP domain protein|Schizosaccharomyces pombe|chr...    25   6.3  
SPCC1620.03 |mug163||sequence orphan|Schizosaccharomyces pombe|c...    25   6.3  
SPCC1529.01 ||SPCC794.14|membrane transporter|Schizosaccharomyce...    25   8.3  

>SPAC12B10.03 |||WD repeat protein, human WDR20
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 543

 Score = 28.3 bits (60), Expect = 0.89
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -2

Query: 221 WLLRMDHIEYKHSEPIHFLVLHKNL 147
           WL+  D  +Y+H +P+H +V  KNL
Sbjct: 265 WLVLYD--KYRHEQPLHIVVPEKNL 287


>SPAC13F5.05 |||thioredoxin family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 363

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 15/31 (48%), Positives = 18/31 (58%)
 Frame = -1

Query: 534 PPSLTGSLSKKFTTLPSSFSPFLAVSTMLFN 442
           P  L  SLS +F++LP SF P  A    LFN
Sbjct: 177 PTLLYKSLSNEFSSLPFSFMPAKANVNDLFN 207


>SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1315

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = +2

Query: 461 TAKKGEKLDGRVVNFLLKDPVNDGGQWDMLVNLVNK 568
           T+K+G ++   +VN L+   +  GG  DM+  L+ K
Sbjct: 772 TSKRGREVTKELVNSLVNRHLQSGGNIDMVSQLLRK 807


>SPBC17D11.06 |spp2|pri2|DNA primase large subunit Spp2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 459

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -3

Query: 589 LLRH*AVFVHEVHQHVPLSAVVDRILEQEVHN 494
           L+   AVFVH+ + +VP S  V  ++E+   N
Sbjct: 198 LVERRAVFVHKGYAYVPFSEQVSLVVEEFEEN 229


>SPAC4H3.10c |pyk1||pyruvate kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 509

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = -2

Query: 593 STSSALSRICSRGSPACPTVXXXXXXXXXRSSQLFRQVSP 474
           STS   +R+CS+  P+ P V         R S L R V P
Sbjct: 410 STSGNTARLCSKYRPSIPIVMVTRCPQRARQSHLNRGVYP 449


>SPAC23D3.01 |||PWWP domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 407

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 14/42 (33%), Positives = 18/42 (42%)
 Frame = -1

Query: 567 LFTRFTSMSHCPPSLTGSLSKKFTTLPSSFSPFLAVSTMLFN 442
           LFT    +S  P       S +F+TL   F  F+   TM  N
Sbjct: 342 LFTLLVKLSDIPLDEKYDFSSRFSTLLLQFQAFVQPKTMTSN 383


>SPCC1620.03 |mug163||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 186

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 13/41 (31%), Positives = 18/41 (43%)
 Frame = +3

Query: 219 PSTDGRQILHFMFSTLRLRLKGNLSPIKRAPVDAGCLQHST 341
           P  +G  I  F+F T RL L        + P+D     HS+
Sbjct: 82  PRIEGLTIYKFIFKTARLLLSSTYGSSAKRPIDIIHQLHSS 122


>SPCC1529.01 ||SPCC794.14|membrane transporter|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 462

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -3

Query: 214 FEWIISSTNILSQFIFWFCIKIFAD 140
           ++WI  ST I S FIF   + + A+
Sbjct: 200 YKWIFWSTTIFSGFIFALSLPLLAE 224


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,410,170
Number of Sequences: 5004
Number of extensions: 50343
Number of successful extensions: 161
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 258201856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)