Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV32023
(594 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0933 + 21661209-21662813 31 0.69
11_01_0014 + 108647-108816,109704-109803,109891-110018,110232-11... 29 2.1
05_03_0421 + 13768048-13768879,13769054-13769316,13775572-13775691 29 3.7
12_01_0014 + 105422-105520,105598-105725,105939-106101,106198-10... 28 4.9
08_02_1532 + 27675824-27676531 28 4.9
08_01_0354 - 3113931-3113933,3114229-3114244,3114343-3114542,311... 28 6.5
03_01_0300 + 2350232-2352274,2352349-2352669,2352752-2352838,235... 28 6.5
02_02_0701 - 13067547-13067580,13067725-13067864,13068525-130686... 28 6.5
08_02_1525 + 27661094-27661801 27 8.5
>10_08_0933 + 21661209-21662813
Length = 534
Score = 31.1 bits (67), Expect = 0.69
Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = +2
Query: 281 GKPVTNQESSGRCWLFAALNVMR-LPFMKKYGIEE 382
G T + SGRC L ALN+ LPF++K ++E
Sbjct: 76 GGAATTDDRSGRCGLLNALNLSTFLPFVRKPAVDE 110
>11_01_0014 +
108647-108816,109704-109803,109891-110018,110232-110394,
110491-110603,111080-111118,111319-111402,111486-111534,
111624-111715,111999-112128,112225-112301,112377-113995,
114348-114545,114635-115173
Length = 1166
Score = 29.5 bits (63), Expect = 2.1
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -3
Query: 283 PFSLNLKVENMK*SICLPSVDGYFEW 206
PFS NLK+ + S C PS D + +W
Sbjct: 640 PFSQNLKLADSNDSTCQPSSDKHHDW 665
>05_03_0421 + 13768048-13768879,13769054-13769316,13775572-13775691
Length = 404
Score = 28.7 bits (61), Expect = 3.7
Identities = 16/52 (30%), Positives = 27/52 (51%)
Frame = +2
Query: 413 WDKIERSHFWLNNIVETAKKGEKLDGRVVNFLLKDPVNDGGQWDMLVNLVNK 568
WD ++ +H + E K E L+GR+ F++ D +D ++ LVNK
Sbjct: 135 WDTLQLAHEGSPAVCEA--KIELLEGRLGRFVMDDKETPQEMYDRMMILVNK 184
>12_01_0014 +
105422-105520,105598-105725,105939-106101,106198-106310,
106787-106825,107026-107109,107193-107241,107331-107422,
107680-107809,107906-107982,108058-109676,110024-110221,
110287-110825
Length = 1109
Score = 28.3 bits (60), Expect = 4.9
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -3
Query: 283 PFSLNLKVENMK*SICLPSVDGYFEW 206
PFS NLK+ S C PS D + +W
Sbjct: 583 PFSQNLKLAECNDSTCQPSSDKHRDW 608
>08_02_1532 + 27675824-27676531
Length = 235
Score = 28.3 bits (60), Expect = 4.9
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = -3
Query: 421 LIPKEQVTL*EFKFFNSIFLHERQTHHVECCKQPASTGALLI 296
++PK + F+ NS+ +E Q +ECC GA+L+
Sbjct: 177 VLPKLSLISKAFQKKNSVICNEEQLQALECCIGDLEAGAVLL 218
>08_01_0354 -
3113931-3113933,3114229-3114244,3114343-3114542,
3114653-3114731,3114844-3115209,3115557-3115773,
3116455-3116593,3116958-3117228,3117986-3118095,
3118967-3119122
Length = 518
Score = 27.9 bits (59), Expect = 6.5
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = -1
Query: 528 SLTGSLSKKFTTLPSSFSPFLAVSTMLFNQKCDLSILSQKN 406
+LTG F T+P + P +A ST+ + K L I+ Q N
Sbjct: 362 NLTGVYKTDFPTMPGNAPPKMASSTLNASYKGFLEIVFQNN 402
>03_01_0300 + 2350232-2352274,2352349-2352669,2352752-2352838,
2353031-2353708,2353800-2353964,2354139-2354433,
2354581-2354795,2354885-2355190,2355269-2355332,
2355426-2355665,2355783-2355886
Length = 1505
Score = 27.9 bits (59), Expect = 6.5
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = -3
Query: 211 EWIISSTNILSQFIFWFCIKIFADF 137
EW+ +LS F+F FC+ I F
Sbjct: 1165 EWLCLRMELLSTFVFAFCMAILVSF 1189
>02_02_0701 -
13067547-13067580,13067725-13067864,13068525-13068659,
13068761-13068808,13068834-13068859,13068990-13069057,
13069101-13069112,13070359-13070415,13070817-13070935,
13071700-13071810,13076755-13077066
Length = 353
Score = 27.9 bits (59), Expect = 6.5
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = -3
Query: 232 PSVDGYFEWIISSTNILSQFIFWFCIKIF 146
PS + + ++S TN+L +I WF I+
Sbjct: 159 PSFENLCQTVVSFTNLLKMYILWFISWIY 187
>08_02_1525 + 27661094-27661801
Length = 235
Score = 27.5 bits (58), Expect = 8.5
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = -3
Query: 418 IPKEQVTL*EFKFFNSIFLHERQTHHVECCKQPASTGALLI 296
+PK + F+ NS+ +E Q +ECC + GA L+
Sbjct: 178 MPKLSLISKAFQKKNSVICNEEQLQVLECCIRDLEAGAALL 218
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,832,227
Number of Sequences: 37544
Number of extensions: 299788
Number of successful extensions: 762
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 743
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 762
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1411925004
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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