Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV32023
         (594 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M29493-1|AAA27728.1|   74|Apis mellifera protein ( Bee homeobox-...    21   6.9  
M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee homeobox-...    21   6.9  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    21   6.9  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    21   6.9  

>M29493-1|AAA27728.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H90. ).
          Length = 74

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = +3

Query: 135 QKSAKIFMQNQKMNW 179
           ++  KI+ QN++M W
Sbjct: 49  ERQIKIWFQNRRMKW 63


>M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H55. ).
          Length = 86

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = +3

Query: 135 QKSAKIFMQNQKMNW 179
           ++  KI+ QN++M W
Sbjct: 49  ERQIKIWFQNRRMKW 63


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = +3

Query: 135 QKSAKIFMQNQKMNW 179
           ++  KI+ QN++M W
Sbjct: 311 ERQIKIWFQNRRMKW 325


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = +1

Query: 67  YFN*LAK*TQDVEFSASNIRRAIKNPQRF 153
           YF+   K   D+ +  S++R  +KN  +F
Sbjct: 190 YFHQFYKQQPDLNYRNSDVREEMKNIMKF 218


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,150
Number of Sequences: 438
Number of extensions: 3224
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17359926
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)