Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV32016
         (736 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces pombe...   160   2e-40
SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter family|Sch...    27   2.1  
SPCC1753.01c |ssb2|SPCC584.06c, rpa2|single-stranded DNA binding...    26   6.4  
SPBC29A3.10c |atp14||F1-ATPase subunit H |Schizosaccharomyces po...    25   8.5  

>SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 273

 Score =  160 bits (388), Expect = 2e-40
 Identities = 84/200 (42%), Positives = 110/200 (55%), Gaps = 2/200 (1%)
 Frame = +3

Query: 141 YQ*WRDISREGTYQGKHTILVNKGLR*GXXXXXXXXXXXXXXXXXXXXPRRLSPNIEIGR 320
           Y  +RD+S E    G HT  V KGL+ G                       LSP  E+G 
Sbjct: 65  YLWFRDMSTEANIHGAHTKAVTKGLKIGFMLFLISETFLFASIFWAFFHSSLSPTFELGA 124

Query: 321 I*PPSRITP--FNPFQIPLLNTIILIRSGGTVT*AHHSLIENNFSQTKQRLFLTILLGFY 494
           + PP  I     +P ++PLLNT+IL+ SG ++T AH+SLI  N     + L++TI L F 
Sbjct: 125 VWPPVGIADKTIDPLEVPLLNTVILLTSGASLTYAHYSLIARNRENALKGLYMTIALSFL 184

Query: 495 FTILQAYEYIEASFTIADRIYGSTFFIATGFHGIHVIIGTLFLLICYIRHLNNHFSKNHH 674
           F   QAYEY  A FTI+D +YG++F+ ATG HGIH+I+GT+ LL+        H +  HH
Sbjct: 185 FLGGQAYEYWNAPFTISDSVYGASFYFATGLHGIHIIVGTILLLVATYNIYTYHLTNTHH 244

Query: 675 FGFEAAA*Y*HFVDVV*LFL 734
            GFE    Y HF DVV LFL
Sbjct: 245 NGFECGIYYWHFCDVVWLFL 264


>SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 791

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -1

Query: 415 HVTVPPDLIKMIVFNKGIWNGL 350
           ++ VPP L+  ++F  GIW+ L
Sbjct: 576 YMKVPPRLVAALLFTSGIWSSL 597


>SPCC1753.01c |ssb2|SPCC584.06c, rpa2|single-stranded DNA binding
           protein Ssb2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 279

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +3

Query: 585 FHGIHVIIGTLFLLICYIRHLNNHFSKNHHFGFEAAA*Y*HF 710
           +  I +  G +++   YIR + +H   + HF  EA A + HF
Sbjct: 130 YGNIKIFSGKIYIASQYIRTIKDHNEVHFHF-LEAIAVHLHF 170


>SPBC29A3.10c |atp14||F1-ATPase subunit H |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 103

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 8/29 (27%), Positives = 19/29 (65%)
 Frame = +3

Query: 432 IENNFSQTKQRLFLTILLGFYFTILQAYE 518
           +  ++S T  RL++ ++ G Y + L++Y+
Sbjct: 8   LSRSYSTTSPRLYVDVVQGLYISSLKSYK 36


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,444,787
Number of Sequences: 5004
Number of extensions: 43612
Number of successful extensions: 84
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)