Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV32014
         (759 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21.01 |mis17|SPBC776.19|kinetochore protein Mis17|Schizosacc...    29   0.54 
SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    27   2.2  
SPBC1A4.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   5.1  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    25   8.9  
SPBC800.09 |sum2||G2/M transition checkpoint protein Sum2|Schizo...    25   8.9  

>SPBC21.01 |mis17|SPBC776.19|kinetochore protein
           Mis17|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 441

 Score = 29.5 bits (63), Expect = 0.54
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = -3

Query: 286 LMSLKKFLSAQCKKKCNEKIS*T*LLSFMRDERL 185
           L+   + LS  CKK  NEK++    LS +R++RL
Sbjct: 319 LLDANRILSTACKKAANEKLAVQRDLSKLREDRL 352


>SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 468

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -1

Query: 117 DTSGPGELCSATGFVSNTSTGQL 49
           D SGPGE     GF+ N +T QL
Sbjct: 285 DFSGPGEYDVDDGFIDNRATSQL 307


>SPBC1A4.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 249

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = -1

Query: 336 KRLSNISNNIRLNTTFVSCHSRNFLVLNVKKNAMRKF 226
           + LS  SNN   N ++ S  +RNF+  NV  N  + F
Sbjct: 25  RNLSQSSNN---NVSYASSSNRNFVPQNVLNNEYQSF 58


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = +1

Query: 571  DTLKYFNYNYGPIMFTNVFMHFPIKYMYFEHGFSNYL 681
            DTL++  ++     F + F + P    +FE G  NY+
Sbjct: 3963 DTLRFLRHDEEAKRFLDPFKNPPYYVQFFEIGAKNYM 3999


>SPBC800.09 |sum2||G2/M transition checkpoint protein
           Sum2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -2

Query: 128 PFYLILVDPANFVPPQGL 75
           P+Y+    PA FVPP GL
Sbjct: 136 PYYMYPNAPAQFVPPGGL 153


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,842,328
Number of Sequences: 5004
Number of extensions: 55328
Number of successful extensions: 160
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)