Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV32013
(700 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 270 1e-73
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 151 9e-38
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 149 5e-37
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 128 8e-31
SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein Pof11|Schizos... 29 0.85
SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|ch... 28 1.1
SPAC6C3.08 |||gankyrin|Schizosaccharomyces pombe|chr 1|||Manual 27 3.4
SPBC119.04 |mei3||meiosis inducing protein Mei3 |Schizosaccharom... 26 4.5
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|... 26 6.0
SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos... 25 7.9
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 270 bits (663), Expect = 1e-73
Identities = 124/206 (60%), Positives = 151/206 (73%)
Frame = +2
Query: 68 GNQIGSKFWEIISDEHGVDTTGVYKGESDLQLDRINVYYNEASSGKYVPRAVLVDLEPGT 247
GNQ+G+ FW I+DEHG+D+ G+Y G S+ Q +R+NVY+NEA+ GKYVPRAVLVDLEPGT
Sbjct: 13 GNQVGAAFWSTIADEHGLDSAGIYHGTSEAQHERLNVYFNEAAGGKYVPRAVLVDLEPGT 72
Query: 248 MDAVRSGPYGMLFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVIRKEAESCDCLQG 427
MDAV+SG +G LFRPDN ++GQSGAGN WAKGHYTEGAEL D+VLDV+R+EAE+CD LQG
Sbjct: 73 MDAVKSGKFGNLFRPDNIIYGQSGAGNIWAKGHYTEGAELADAVLDVVRREAEACDALQG 132
Query: 428 FQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTFXXXXXXXXXXXXXXXYNATLSVHQL 607
FQ KIREEYPDR+M TF YNATLS+HQL
Sbjct: 133 FQLTHSLGGGTGSGMGTLLLSKIREEYPDRMMATFSVAPAPKSSDTVVEPYNATLSMHQL 192
Query: 608 VENTDMSFCIDNEALYNICFKTLRLQ 685
VEN+D +FCIDNEAL +I TL+++
Sbjct: 193 VENSDETFCIDNEALSSIFANTLKIK 218
Score = 31.9 bits (69), Expect = 0.091
Identities = 12/13 (92%), Positives = 13/13 (100%)
Frame = +1
Query: 31 MREIVHVQAGQCG 69
MREIVH+QAGQCG
Sbjct: 1 MREIVHIQAGQCG 13
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 151 bits (366), Expect = 9e-38
Identities = 78/215 (36%), Positives = 115/215 (53%), Gaps = 7/215 (3%)
Frame = +2
Query: 65 AGNQIGSKFWEIISDEHGVDTTG-------VYKGESDLQLDRINVYYNEASSGKYVPRAV 223
AG QIG+ WE+ EHG+ G V+K S L D +++E GK+VPR++
Sbjct: 12 AGVQIGNACWELYCLEHGIGPDGFPTENSEVHKNNSYLN-DGFGTFFSETGQGKFVPRSI 70
Query: 224 LVDLEPGTMDAVRSGPYGMLFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVIRKEA 403
VDLEP +D VR+GPY LF P+ V G+ A NN+A+GHYT G E++DSVL+ IR+ A
Sbjct: 71 YVDLEPNVIDQVRTGPYKDLFHPEQMVTGKEDASNNYARGHYTVGKEMIDSVLERIRRMA 130
Query: 404 ESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTFXXXXXXXXXXXXXXXYN 583
++C LQGF ++ EY + F YN
Sbjct: 131 DNCSGLQGFLVFHSFGGGTGSGLGALLLERLNMEYGKKSNLQFSVYPAPQVSTSVVEPYN 190
Query: 584 ATLSVHQLVENTDMSFCIDNEALYNICFKTLRLQQ 688
+ L+ H ++N+D +F +DNEA Y+IC + L +++
Sbjct: 191 SVLTTHATLDNSDCTFMVDNEACYDICRRNLDIER 225
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 149 bits (360), Expect = 5e-37
Identities = 74/210 (35%), Positives = 109/210 (51%), Gaps = 2/210 (0%)
Frame = +2
Query: 65 AGNQIGSKFWEIISDEHGVDTTGVYKGESDLQLDR--INVYYNEASSGKYVPRAVLVDLE 238
AG QIG+ WE+ EHG+ G E+ Q + +++E GKYVPR++ VDLE
Sbjct: 12 AGTQIGNACWELYCLEHGIQPNGYMNPETASQNSDGGFSTFFSETGQGKYVPRSIYVDLE 71
Query: 239 PGTMDAVRSGPYGMLFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVIRKEAESCDC 418
P +D VR+GPY LF P+ + G+ A NN+A+GHYT G ELVD V D IR+ A++C
Sbjct: 72 PNVIDQVRTGPYRDLFHPEQLITGKEDASNNYARGHYTVGKELVDEVTDKIRRIADNCSG 131
Query: 419 LQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTFXXXXXXXXXXXXXXXYNATLSV 598
LQGF ++ EY + F YN+ L+
Sbjct: 132 LQGFLVFHSFGGGTGSGFGALLLERLAMEYTKKSKLQFSVYPAPQVSTSVVEPYNSVLTT 191
Query: 599 HQLVENTDMSFCIDNEALYNICFKTLRLQQ 688
H ++ D +F +DNE+ Y+IC + L +++
Sbjct: 192 HATLDLADCTFMVDNESCYDICRRNLDIER 221
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 128 bits (309), Expect = 8e-31
Identities = 65/216 (30%), Positives = 111/216 (51%), Gaps = 3/216 (1%)
Frame = +2
Query: 47 TCKPANAGNQIGSKFWEIISDEHGVDTTGVYKGESDLQLDRINVYYNEASSGKYVPRAVL 226
T + GNQIGS+FW+ + EHG+ G + + +DR +V++ ++ +Y+PRA+L
Sbjct: 7 TLQAGQCGNQIGSQFWQQLCLEHGIGPDGTLESFATEGVDRKDVFFYQSDDTRYIPRAIL 66
Query: 227 VDLEPGTMDAVRSGPYGMLFRPDNFVFGQS--GAGNNWAKGHYTEGAELVDSVLDVIRKE 400
+DLEP ++ + S YG L+ P+N + ++ GAGNNWA G Y+ + + ++D+I +E
Sbjct: 67 IDLEPRVVNNILSDTYGSLYNPENILITKNGGGAGNNWANG-YSHAERIFEDIMDMIDRE 125
Query: 401 AESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTF-XXXXXXXXXXXXXXX 577
A+ D L+GF ++ + YP +I+ T+
Sbjct: 126 ADGSDSLEGFSLLHSIAGGTGSGLGSFLLERLNDRYPKKIIQTYSVFPNSQSVSDVVVQP 185
Query: 578 YNATLSVHQLVENTDMSFCIDNEALYNICFKTLRLQ 685
YN+ L++ +L N D +DN AL +I L Q
Sbjct: 186 YNSLLALKRLTLNADSVVVLDNAALAHIAADRLHTQ 221
>SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein
Pof11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 506
Score = 28.7 bits (61), Expect = 0.85
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = +2
Query: 266 GPYGMLFRPDNFVFGQSGAG-NNWAKGHYTEGAEL 367
GPYG +F P F+F +G NW+ Y E A L
Sbjct: 157 GPYGTMFLPQQFIFDSNGRPLLNWSY-LYKEHAHL 190
>SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 677
Score = 28.3 bits (60), Expect = 1.1
Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 4/42 (9%)
Frame = +3
Query: 531 SALYPRLRLARSSWS----PTTRRCPCTSWSRTRTCPSASTT 644
S++ PR R W+ P TRR P S S + T PSA+ T
Sbjct: 427 SSVIPRRIALRDGWTMLPIPGTRRIPTYSQSTSTTNPSATPT 468
>SPAC6C3.08 |||gankyrin|Schizosaccharomyces pombe|chr 1|||Manual
Length = 234
Score = 26.6 bits (56), Expect = 3.4
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +2
Query: 335 AKGHYTEGAELVDSVLDVIRKEAESCDCLQ 424
A+GH G ELV + D +RK++E+ L+
Sbjct: 183 AEGHPDVGVELVRAGADTLRKDSENHTALE 212
>SPBC119.04 |mei3||meiosis inducing protein Mei3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 148
Score = 26.2 bits (55), Expect = 4.5
Identities = 19/53 (35%), Positives = 26/53 (49%)
Frame = +3
Query: 504 NTRTES*IRSALYPRLRLARSSWSPTTRRCPCTSWSRTRTCPSASTTKRYTTS 662
N+R + SAL R AR S SP T ++ + T+T A TT +TS
Sbjct: 8 NSRHPASSASALPNRTNTARRSTSPRTSTGSSSTNTNTKTVDHAGTTFISSTS 60
>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1752
Score = 25.8 bits (54), Expect = 6.0
Identities = 20/56 (35%), Positives = 24/56 (42%)
Frame = +3
Query: 531 SALYPRLRLARSSWSPTTRRCPCTSWSRTRTCPSASTTKRYTTSASRH*DFNSPSY 698
SA P S+SPT+ TS S + T PS S T + S SPSY
Sbjct: 1607 SATSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1662
Score = 25.4 bits (53), Expect = 7.9
Identities = 17/44 (38%), Positives = 21/44 (47%)
Frame = +3
Query: 567 SWSPTTRRCPCTSWSRTRTCPSASTTKRYTTSASRH*DFNSPSY 698
S+SPT+ TS S + T PS S T + S SPSY
Sbjct: 1598 SYSPTSPSYSATSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1641
>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1063
Score = 25.4 bits (53), Expect = 7.9
Identities = 12/44 (27%), Positives = 20/44 (45%)
Frame = +2
Query: 287 RPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVIRKEAESCDC 418
RP +F G++ G + E D ++ + + ESCDC
Sbjct: 955 RPSRLIF-YDNCGDSSGAGLCNKAYEHTDELITMAIERIESCDC 997
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,658,539
Number of Sequences: 5004
Number of extensions: 50907
Number of successful extensions: 152
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -