Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV32012
         (694 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0288 + 3824337-3826385                                           29   2.6  
02_04_0366 - 22389591-22390527,22391296-22391429,22391762-223918...    29   2.6  
12_02_1233 + 27224219-27225607                                         29   4.6  
07_03_0861 + 22072041-22072789,22074065-22074164                       28   8.1  
06_03_0517 - 21674155-21674334,21674420-21674674,21674829-216749...    28   8.1  
03_01_0228 + 1802038-1803265,1804207-1804245,1804638-1804783,180...    28   8.1  
01_06_1373 - 36729498-36729950,36730024-36730306,36730592-36730605     28   8.1  

>04_01_0288 + 3824337-3826385
          Length = 682

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +2

Query: 425 YRMLKDMVSHKILKTKSEISALTDFLDWLEKE 520
           +++ K   SH   KT +++S L  F DWL+ +
Sbjct: 395 HKITKATTSHHWFKTLNDLSTLVGFADWLDMQ 426


>02_04_0366 -
           22389591-22390527,22391296-22391429,22391762-22391816,
           22392364-22393225,22393342-22393459,22393647-22393737,
           22394627-22394670
          Length = 746

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 18/49 (36%), Positives = 23/49 (46%)
 Frame = -2

Query: 258 REYFPGGRPTGFSASAGGTSVFASISLPFTFTSVTMAINA*FANSLMNR 112
           R   PG  P GF+  AG  SVF  +S+   FTS+   +    A  L  R
Sbjct: 507 RHLRPGAAPGGFAIPAGSLSVFLFLSI-LLFTSLNERVLVPAARRLTRR 554


>12_02_1233 + 27224219-27225607
          Length = 462

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = +2

Query: 296 IDEICQIAAYTPKQTYSQYIMPYGDLNPGARRRHNVRVVTVG-RYRMLK 439
           IDE+C  + + P  TYS Y    G L    +    +R+     RYR++K
Sbjct: 209 IDEVCSSSGWEPFDTYSVYFR--GSLYVHCQNNCVIRITIANHRYRIIK 255


>07_03_0861 + 22072041-22072789,22074065-22074164
          Length = 282

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 14/42 (33%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
 Frame = +2

Query: 275 DTTGRRLIDEICQIAAYTPKQTYSQYIMPYGDLN-PGARRRH 397
           D   RR+I +IC I+ ++PKQ +S+ ++ + +    GAR+ +
Sbjct: 226 DALRRRMI-QICYISHWSPKQCFSRRLVWFNEKECSGARKEY 266


>06_03_0517 -
           21674155-21674334,21674420-21674674,21674829-21674969,
           21675070-21675228,21676578-21676738,21680167-21680302
          Length = 343

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 15/54 (27%), Positives = 26/54 (48%)
 Frame = +2

Query: 212 ALAEKPVGLPPGKYSLIGWDMDTTGRRLIDEICQIAAYTPKQTYSQYIMPYGDL 373
           ALA+K V  PP + +         G  +I  + Q+    P QT++++   YG +
Sbjct: 25  ALADKLVAAPPPRKNRANPPPAVPGLPIIGNLHQLKEKKPHQTFAKWSETYGPI 78


>03_01_0228 +
           1802038-1803265,1804207-1804245,1804638-1804783,
           1804891-1804958,1805045-1805147,1805287-1805400
          Length = 565

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 16/42 (38%), Positives = 23/42 (54%)
 Frame = +2

Query: 368 DLNPGARRRHNVRVVTVGRYRMLKDMVSHKILKTKSEISALT 493
           +L P   R H++RVV +   R+  D    +I+ T  EISA T
Sbjct: 145 ELLPKLPRAHDLRVVLLESARLPGDSSDPRIVATIEEISATT 186


>01_06_1373 - 36729498-36729950,36730024-36730306,36730592-36730605
          Length = 249

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = +2

Query: 488 LTDFLDWLEKEKGDG 532
           L DF DW+EKEK +G
Sbjct: 129 LEDFEDWIEKEKNEG 143


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,764,264
Number of Sequences: 37544
Number of extensions: 345346
Number of successful extensions: 907
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 888
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 907
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)