Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV32011
         (311 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalyti...    25   3.5  
SPBC17A3.09c |||lipoate-protein ligase A |Schizosaccharomyces po...    25   3.5  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    24   4.6  

>SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalytic
            subunit Cdc6 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1086

 Score = 24.6 bits (51), Expect = 3.5
 Identities = 10/32 (31%), Positives = 20/32 (62%)
 Frame = +1

Query: 1    LNRSLQYDRRNLASLNIAAGELSRMYTRKKKC 96
            LNRS +  +R +A +N      +R++T+ ++C
Sbjct: 1012 LNRSAELYQRQVAQVNDLEVRFARLWTQCQRC 1043


>SPBC17A3.09c |||lipoate-protein ligase A |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 363

 Score = 24.6 bits (51), Expect = 3.5
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -2

Query: 118 YYKMNANNTFFYECTCAKVHLRLYSDSPSYV 26
           Y+ +   N + YE + AK  L LY++SPS +
Sbjct: 36  YFNLALEN-YLYENSTAKHCLLLYTNSPSVI 65


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 24.2 bits (50), Expect = 4.6
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -2

Query: 61   HLRLYSDSPSYVGRIVMSD 5
            H+R+ +D PSYV    +SD
Sbjct: 3364 HMRIIADKPSYVTMQTISD 3382


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 882,347
Number of Sequences: 5004
Number of extensions: 10036
Number of successful extensions: 16
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 81889040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)