Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV32010
         (763 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6C3.06c |||P-type ATPase, calcium transporting|Schizosacchar...    27   3.9  
SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces pom...    26   5.1  
SPAC823.16c |mug179||WD repeat protein Mug179|Schizosaccharomyce...    26   6.7  
SPAC105.01c |||potassium ion/proton antiporter|Schizosaccharomyc...    25   8.9  

>SPAC6C3.06c |||P-type ATPase, calcium
           transporting|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1033

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
 Frame = +2

Query: 242 VFVVTKDCRHNEKLFYLYPRLAKS--EKKC*TY 334
           VF +  D   +EKL +L+P L K   E+KC +Y
Sbjct: 874 VFSIVYDRDVSEKLVFLFPELYKEMREQKCFSY 906


>SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1325

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = -2

Query: 99  LIAYLIFYYNSESRSCNYREM 37
           L+AY IFY ++ S+S +Y EM
Sbjct: 421 LVAYRIFYADAISKSIDYPEM 441


>SPAC823.16c |mug179||WD repeat protein Mug179|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 335

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 10/28 (35%), Positives = 22/28 (78%)
 Frame = +3

Query: 234 TLQFSWSRKTVVIMKSCFIYIHDLRNLK 317
           +++F+W+R  V+I  S  IY+++L+N++
Sbjct: 91  SVRFTWNRLVVLIKGS--IYVYNLKNME 116


>SPAC105.01c |||potassium ion/proton antiporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 898

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 12/47 (25%), Positives = 27/47 (57%)
 Frame = +2

Query: 182 FSSFFCCHYNNTISDVSNTAVFVVTKDCRHNEKLFYLYPRLAKSEKK 322
           +  F+   Y  ++ +V  T+  +++K   HN+  F ++P+L K+ +K
Sbjct: 712 YDEFYKDDYATSLPNVVYTSEVLLSK---HNDSAFKVWPKLRKNIRK 755


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,704,264
Number of Sequences: 5004
Number of extensions: 49003
Number of successful extensions: 94
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)