Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV32008
         (773 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19C7.07c |sen34||tRNA-splicing endonuclease subunit Sen34|Sc...    27   2.3  
SPBP4H10.19c |||calreticulin/calnexin homolog|Schizosaccharomyce...    25   9.1  
SPCC1259.13 |chk1|rad27|Chk1 protein kinase|Schizosaccharomyces ...    25   9.1  
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom...    25   9.1  
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom...    25   9.1  
SPAC31G5.16c |dpm1||dolichol-phosphate mannosyltransferase catal...    25   9.1  

>SPBC19C7.07c |sen34||tRNA-splicing endonuclease subunit
           Sen34|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 284

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +3

Query: 390 DDIKDRLKHRMSIAYLESI*IKKNQLNPPIAIKR 491
           DD+K  LK R S+AY + I  KK +    I I +
Sbjct: 89  DDVKQCLKKRQSLAYDQMIAAKKKENEKKIEIMK 122


>SPBP4H10.19c |||calreticulin/calnexin homolog|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 381

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -3

Query: 345 YFCFINFVYSHKSNIK 298
           YF FIN +++H  N+K
Sbjct: 7   YFFFINLIFAHDLNVK 22


>SPCC1259.13 |chk1|rad27|Chk1 protein kinase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 496

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = +2

Query: 128 FVRRSTYVMQYN*KAKKKCILNVIIEKCFVPENNAFIHFLQ 250
           +VR  T ++  N   K+KC+L  +IE   +  N   I+F++
Sbjct: 426 YVRNQT-ILYVNLHDKRKCLLQGVIELTNLGHNLELINFIK 465


>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
            pombe|chr 1||Partial|Manual
          Length = 1887

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = -3

Query: 171  AFQLYCIT-YVLRRTNRDKNKIIYFQNDYSS 82
            A Q +C   YVLR T+  +  I YF + Y +
Sbjct: 1365 ARQTFCTNFYVLRETSTARENIFYFLHPYDN 1395


>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1919

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = -3

Query: 171  AFQLYCIT-YVLRRTNRDKNKIIYFQNDYSS 82
            A Q +C   YVLR T+  +  I YF + Y +
Sbjct: 1365 ARQTFCTNFYVLRETSTARENIFYFLHPYDN 1395


>SPAC31G5.16c |dpm1||dolichol-phosphate mannosyltransferase
           catalytic subunit Dpm1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 236

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = +3

Query: 645 HETQLRDVPLVD-NTLYRRSMLGVDYILGY 731
           H   + +VP+   + LY  S LG+D ILGY
Sbjct: 197 HNYTIGEVPIAFVDRLYGESKLGMDDILGY 226


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,134,400
Number of Sequences: 5004
Number of extensions: 65706
Number of successful extensions: 152
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 373338084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)