Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV32008
         (773 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0293 - 8639826-8639852,8640161-8640361,8641165-8641611,864...    31   1.3  
03_05_0167 - 21448714-21448846,21449748-21449870,21450024-214503...    28   7.2  

>02_02_0293 -
           8639826-8639852,8640161-8640361,8641165-8641611,
           8641726-8641816,8642949-8643949
          Length = 588

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 28/91 (30%), Positives = 42/91 (46%), Gaps = 4/91 (4%)
 Frame = -3

Query: 714 QRRASISCTEYYRQEAHPLVEFRARCNSSKNDTIFDNSCVL----LWRRGRQLRPKPVFI 547
           QR A++  +++ R  A   VE RARC  S+  ++FD   +L     W RG    P P+  
Sbjct: 81  QRAATVPLSDFVR--AVRAVERRARCCYSERTSVFDGYFILEFFFKWNRG---EPDPLCD 135

Query: 546 TFT*KCLLTLN*LFIDNENVLLRWEDLIDFF 454
                 LL  + L ++N+      E L D F
Sbjct: 136 VGWGLTLLHSDLLLLENQIPFFVLERLFDTF 166


>03_05_0167 -
           21448714-21448846,21449748-21449870,21450024-21450302,
           21450389-21450672,21450737-21450964,21452937-21453110,
           21453198-21453732,21453779-21453840,21453908-21454231,
           21454664-21455093,21457033-21457268,21457355-21457414,
           21457495-21457628,21457884-21458010,21458239-21458337,
           21458414-21458513,21458601-21458671,21459101-21459172,
           21459656-21459787,21460512-21460670
          Length = 1253

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 10/26 (38%), Positives = 19/26 (73%), Gaps = 1/26 (3%)
 Frame = -2

Query: 211 TFFNNYIKNT-FLFCFSIILHNVCAS 137
           +FF  Y++   FL CF++ +H+VC++
Sbjct: 345 SFFVEYLERYYFLICFAVYVHSVCSA 370


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,711,506
Number of Sequences: 37544
Number of extensions: 330775
Number of successful extensions: 570
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 560
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 570
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2068401984
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)