Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV32008
         (773 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032632-5|CAA21585.1|  297|Caenorhabditis elegans Hypothetical ...    31   1.2  
AL132943-2|CAC14392.1|  367|Caenorhabditis elegans Hypothetical ...    28   6.4  
AL031254-3|CAJ76926.1|  180|Caenorhabditis elegans Hypothetical ...    28   6.4  
AL031254-2|CAB63429.2|  344|Caenorhabditis elegans Hypothetical ...    28   6.4  
AC006730-2|AAK72091.1|  322|Caenorhabditis elegans Serpentine re...    23   7.6  
U97196-7|AAB52462.1|  141|Caenorhabditis elegans Hypothetical pr...    28   8.5  

>AL032632-5|CAA21585.1|  297|Caenorhabditis elegans Hypothetical
           protein Y11D7A.9 protein.
          Length = 297

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
 Frame = +3

Query: 27  IYF*IDLYQLI--STLLIDNETNNRFENILFYFCLYLCGEAHTLCNI 161
           +YF + L +LI  S L I  E  N   +++F++   +CG  H + NI
Sbjct: 144 LYFVVGLLELIFLSGLSIIGERENIQVHVIFFYVFGICGIVHMISNI 190


>AL132943-2|CAC14392.1|  367|Caenorhabditis elegans Hypothetical
           protein Y116F11B.5 protein.
          Length = 367

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +3

Query: 69  LIDNETNNRFENILFYFCLYLCGEAHTLCNIIE 167
           ++  E+       LF   + LCG  H +CNIIE
Sbjct: 55  VLTRESMRHLTTNLFLIGMTLCGIIHMICNIIE 87


>AL031254-3|CAJ76926.1|  180|Caenorhabditis elegans Hypothetical
           protein 4R79.1b protein.
          Length = 180

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 10/70 (14%)
 Frame = -3

Query: 333 INFVYS----HKSNIKVETIKS*IQLLPIEI------SCKKCINALFSGTKHFSIITLRI 184
           IN +YS     K  +K  T +   QL+P  +      S +KC++  F+   HF+    R 
Sbjct: 95  INKLYSCKTKKKEKVKPATTEEPHQLIPQVVDKNSVDSGEKCVDH-FADCPHFAQYCTRA 153

Query: 183 HFFFAFQLYC 154
            FFF  + YC
Sbjct: 154 SFFFVMKSYC 163


>AL031254-2|CAB63429.2|  344|Caenorhabditis elegans Hypothetical
           protein 4R79.1a protein.
          Length = 344

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 10/70 (14%)
 Frame = -3

Query: 333 INFVYS----HKSNIKVETIKS*IQLLPIEI------SCKKCINALFSGTKHFSIITLRI 184
           IN +YS     K  +K  T +   QL+P  +      S +KC++  F+   HF+    R 
Sbjct: 259 INKLYSCKTKKKEKVKPATTEEPHQLIPQVVDKNSVDSGEKCVDH-FADCPHFAQYCTRA 317

Query: 183 HFFFAFQLYC 154
            FFF  + YC
Sbjct: 318 SFFFVMKSYC 327


>AC006730-2|AAK72091.1|  322|Caenorhabditis elegans Serpentine
           receptor, class i protein34 protein.
          Length = 322

 Score = 23.4 bits (48), Expect(2) = 7.6
 Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 3/28 (10%)
 Frame = -3

Query: 369 SISFA---WRVYFCFINFVYSHKSNIKV 295
           SISFA   W +Y+C+I    S   N+ V
Sbjct: 2   SISFAPSTWLIYYCYIVGAVSFVLNVLV 29



 Score = 23.0 bits (47), Expect(2) = 7.6
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -3

Query: 213 KHFSIITLRIHFFFAFQLYCITYVLRRT 130
           K + I+  + +   AFQ+ C  YVL+ T
Sbjct: 36  KSYKIVEFQ-YMLLAFQISCTNYVLQLT 62


>U97196-7|AAB52462.1|  141|Caenorhabditis elegans Hypothetical
           protein B0207.8 protein.
          Length = 141

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 14/50 (28%), Positives = 26/50 (52%)
 Frame = -3

Query: 717 NQRRASISCTEYYRQEAHPLVEFRARCNSSKNDTIFDNSCVLLWRRGRQL 568
           NQ++  +     + +     V F+   N S N+ + +N   L++RRGRQ+
Sbjct: 91  NQKKNLVKFKNGFCENTMKFVNFQ-NINRSTNEILDENKWHLMYRRGRQI 139


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,024,550
Number of Sequences: 27780
Number of extensions: 361047
Number of successful extensions: 812
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 783
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 812
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1861650246
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)