Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV32007
         (706 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P30647 Cluster: Uncharacterized protein ZK643.1; n=2; C...    33   5.2  
UniRef50_Q8CIZ5 Cluster: Deleted in malignant brain tumors 1 pro...    33   6.8  

>UniRef50_P30647 Cluster: Uncharacterized protein ZK643.1; n=2;
           Caenorhabditis|Rep: Uncharacterized protein ZK643.1 -
           Caenorhabditis elegans
          Length = 292

 Score = 33.5 bits (73), Expect = 5.2
 Identities = 21/77 (27%), Positives = 36/77 (46%), Gaps = 3/77 (3%)
 Frame = +2

Query: 401 QFTNAIEILTSRIKVGGVHVVMRVLKSIGLSKWSHXHITAVFVV---YVDSKIELSTQRD 571
           +F NA  +L S      VH     +K IG + W + H   +F     Y+D++++L     
Sbjct: 19  EFFNAKVLLDSSDPDTVVHSFCAEIKGIGRTGWVNIHTDKIFETEKTYIDTQVQLCDSGT 78

Query: 572 FLSL*QYVFPHSTSIPV 622
            L + ++ FP    IP+
Sbjct: 79  CLPVGKHQFPVQIRIPL 95


>UniRef50_Q8CIZ5 Cluster: Deleted in malignant brain tumors 1
           protein precursor; n=6; Rattus norvegicus|Rep: Deleted
           in malignant brain tumors 1 protein precursor - Rattus
           norvegicus (Rat)
          Length = 1418

 Score = 33.1 bits (72), Expect = 6.8
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +1

Query: 409 QCN*DFDLAYQGGWGSRCDESFKIN 483
           +C    ++ YQG WG+ CD+S+ IN
Sbjct: 113 RCRGRVEILYQGSWGTMCDDSWDIN 137


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 625,404,021
Number of Sequences: 1657284
Number of extensions: 11621933
Number of successful extensions: 23256
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 22210
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23255
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 56198352344
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)