Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV32007
         (706 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory recept...    24   1.4  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    22   5.6  
AM292343-1|CAL23155.2|  301|Tribolium castaneum gustatory recept...    21   9.8  
AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain tran...    21   9.8  
AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.          21   9.8  

>AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory receptor
           candidate 61 protein.
          Length = 670

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +3

Query: 132 YPFSNETHPLFNTVFYSFNS*RMLKLF 212
           Y  S E +PLF+   YSFN+   L +F
Sbjct: 58  YFASLEKNPLFDGQLYSFNTFAKLLIF 84


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +2

Query: 260 YVFVSGDVQTNFPIICIHS 316
           YV V+GDV ++  I  IH+
Sbjct: 465 YVTVNGDVVSHLNITAIHT 483


>AM292343-1|CAL23155.2|  301|Tribolium castaneum gustatory receptor
           candidate 22 protein.
          Length = 301

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 4/51 (7%)
 Frame = +2

Query: 254 VSYVFVSGDVQTNFPIICIHSFY*YS----IKGSNTHTSVS*RYFTYKRSS 394
           +++V + GD+ T+  II    FY +       G N  T V   ++  KR+S
Sbjct: 164 MNFVLLIGDLHTSIYIIFFDMFYQHHKIVLDMGKNCVTYVFDLFYLSKRAS 214


>AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain
           transcription factor Zen2 protein.
          Length = 243

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 6/13 (46%), Positives = 11/13 (84%)
 Frame = +3

Query: 552 NYLHNEIFSHYSN 590
           NY +N+ +S+Y+N
Sbjct: 214 NYQYNQAYSNYNN 226


>AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.
          Length = 292

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 6/13 (46%), Positives = 11/13 (84%)
 Frame = +3

Query: 552 NYLHNEIFSHYSN 590
           NY +N+ +S+Y+N
Sbjct: 234 NYQYNQAYSNYNN 246


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 157,180
Number of Sequences: 336
Number of extensions: 3319
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18634795
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)