Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV32004
         (640 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A7PUU9 Cluster: Chromosome chr4 scaffold_32, whole geno...    33   5.8  
UniRef50_A0CY97 Cluster: Chromosome undetermined scaffold_31, wh...    33   5.8  

>UniRef50_A7PUU9 Cluster: Chromosome chr4 scaffold_32, whole genome
           shotgun sequence; n=4; core eudicotyledons|Rep:
           Chromosome chr4 scaffold_32, whole genome shotgun
           sequence - Vitis vinifera (Grape)
          Length = 202

 Score = 33.1 bits (72), Expect = 5.8
 Identities = 18/50 (36%), Positives = 26/50 (52%)
 Frame = +3

Query: 276 AANPMN*AQLMLRLSLVLTNCYFSFVTIGANGTF*LLPIDICYYPKIFLC 425
           +A  M   + + RLSL L  C F FV +G NG F  + + +C    + LC
Sbjct: 133 SAEVMKAVEEISRLSLSLCFCLFLFVCVGVNGIF-CVSVSVCIGVTLELC 181


>UniRef50_A0CY97 Cluster: Chromosome undetermined scaffold_31, whole
           genome shotgun sequence; n=1; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_31,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 1833

 Score = 33.1 bits (72), Expect = 5.8
 Identities = 20/66 (30%), Positives = 34/66 (51%)
 Frame = -2

Query: 261 NCLIIREHPKKLDFIFTLAARPGFAWEIAHAI*IILGNLFTHWVTSLEFQ*GILNFFENI 82
           NCL+I     +   I +L A   FA++ A  I I +  +F    ++ EF  GIL+F   +
Sbjct: 66  NCLLILPIQHEQKIIHSLIASAFFAFQSAIIIFISILTIFRKISSNTEFTNGILHFMLRV 125

Query: 81  INIAYV 64
           +N  ++
Sbjct: 126 VNFYFL 131


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 615,234,484
Number of Sequences: 1657284
Number of extensions: 11544907
Number of successful extensions: 18134
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 17794
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18133
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 47711253245
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)