Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV32004
         (640 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0344 - 24536516-24537323,24537449-24537567,24539044-245394...    28   7.2  
12_01_1059 - 10934937-10935446,10938224-10938271,10938383-109386...    27   9.5  
04_04_1196 + 31663113-31663337,31663719-31663802,31665340-316654...    27   9.5  

>04_04_0344 -
           24536516-24537323,24537449-24537567,24539044-24539484,
           24540291-24540508,24540641-24540728
          Length = 557

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -3

Query: 158 F*VICLHIGLHHWSFSRGSL 99
           F  + LHIGL+ W+FS G +
Sbjct: 136 FNTVILHIGLYTWAFSEGCI 155


>12_01_1059 -
           10934937-10935446,10938224-10938271,10938383-10938619,
           10938711-10938747,10941018-10941286
          Length = 366

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +3

Query: 498 APMII*NHNDSKEVSLQYILFSHKSFNLPPKISRYPIWGY 617
           A  ++ +H ++ ++   Y LF H SFNL   +  Y   GY
Sbjct: 57  ATTLLYSHGNAADLGHLYQLFLHLSFNLRVNVLGYDYSGY 96


>04_04_1196 +
           31663113-31663337,31663719-31663802,31665340-31665427,
           31666645-31666830,31667245-31667351
          Length = 229

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +3

Query: 402 YYPKIFLCKLILPHGEEQKKTKSLP 476
           +Y  +  C L+LP+G E  K   LP
Sbjct: 119 FYYLLIACSLVLPYGSELHKNMDLP 143


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,699,386
Number of Sequences: 37544
Number of extensions: 289400
Number of successful extensions: 441
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 431
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 441
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1573040476
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)