Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV31998
(670 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transpo... 50 4e-07
SPAC323.04 |||mitochondrial ATPase |Schizosaccharomyces pombe|ch... 43 3e-05
SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces po... 40 2e-04
SPCC663.03 |pmd1||leptomycin efflux transporter Pmd1|Schizosacch... 40 4e-04
SPCC417.08 |tef3||translation elongation factor eEF3|Schizosacch... 38 0.001
SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces po... 38 0.001
SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase Abc4|... 38 0.002
SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces pom... 36 0.007
SPCC825.01 |||ribosome biogenesis ATPase, Arb family |Schizosacc... 36 0.007
SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc... 35 0.012
SPAC15A10.01 |atm1|SPAC8C9.18|ABC family iron transporter Atm1|S... 35 0.012
SPAC20G4.01 ||SPAC22F8.13|CCR4-Not complex subunit Caf16|Schizos... 34 0.021
SPBC16H5.08c |||ribosome biogenesis ATPase, Arb family |Schizosa... 31 0.15
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo... 30 0.26
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 29 0.46
SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyce... 29 0.80
SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15 |Sc... 28 1.4
SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces pomb... 28 1.4
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy... 27 1.8
SPBC902.06 |mto2||MT organizer Mto2|Schizosaccharomyces pombe|ch... 27 1.8
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 27 1.8
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce... 27 1.8
SPAC32A11.03c |phx1||homeobox transcription factor Phx1|Schizosa... 27 1.8
SPAC821.06 |spn2||septin Spn2|Schizosaccharomyces pombe|chr 1|||... 27 2.4
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 27 3.2
SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein Bms1|Schizosacc... 27 3.2
SPBC9B6.09c |mdl1||mitochondrial peptide-transporting ATPase|Sch... 27 3.2
SPAC2H10.01 |||transcription factor, zf-fungal binuclear cluster... 27 3.2
SPAP8A3.11c |||mitochondrial GTPase Mtg2|Schizosaccharomyces pom... 26 4.3
SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|ch... 26 4.3
SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pomb... 26 5.6
SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 26 5.6
SPAC9G1.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 26 5.6
SPAC890.05 |||ribosome biogenesis protein|Schizosaccharomyces po... 26 5.6
SPBC16D10.02 |trm11||tRNA |Schizosaccharomyces pombe|chr 2|||Manual 26 5.6
SPAC1486.01 |||manganese superoxide dismutase |Schizosaccharomyc... 25 7.5
SPCC162.11c |||uridine kinase |Schizosaccharomyces pombe|chr 3||... 25 7.5
SPAC644.07 |||Rieske ISP assembly protein|Schizosaccharomyces po... 25 7.5
SPAC630.09c |mug58||glycerate kinase |Schizosaccharomyces pombe|... 25 7.5
SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal |Schizos... 25 7.5
SPCC24B10.10c |||mitochondrial outer membrane ATPase Msp1 |Schiz... 25 7.5
SPAP27G11.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 25 9.9
SPCC14G10.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3|... 25 9.9
SPAC1D4.12 |rad15|rhp3|transcription factor TFIIH complex subuni... 25 9.9
SPBC1683.04 |||glycosyl hydrolase family 3|Schizosaccharomyces p... 25 9.9
SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces po... 25 9.9
>SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transporter
Bfr1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1530
Score = 49.6 bits (113), Expect = 4e-07
Identities = 33/103 (32%), Positives = 55/103 (53%), Gaps = 3/103 (2%)
Frame = +2
Query: 341 VEKGTIYGLLGPSGCGKTTLLSCIVGRRSLDSGNVWVLGGKPGEKGSGVPGP---RVGYM 511
V G + L+G SG GKTTLL+ + R +D+G V+ G G G+ R GY+
Sbjct: 908 VVPGKLTALMGESGAGKTTLLNVLAQR--VDTG---VVTGDMLVNGRGLDSTFQRRTGYV 962
Query: 512 PQDIALVGEFTVRDAVYYFGRIYGMEHKKMTERFEFLSSLLDL 640
Q +GE TVR+A+ + + ++E++E++ S++ L
Sbjct: 963 QQQDVHIGESTVREALRFSAALRQPASVPLSEKYEYVESVIKL 1005
>SPAC323.04 |||mitochondrial ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 487
Score = 43.2 bits (97), Expect = 3e-05
Identities = 25/79 (31%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Frame = +2
Query: 254 MAVREAAVIVECANKSYGQQNVLKDLDLTVEKGTIYGLLGPSGCGKTTLLSCIVG-RRSL 430
+ + + + +E N Y + VL D++ T+ +G + L G +G GKTTLL+ +VG L
Sbjct: 258 ITIGKPLISMEHLNCVYWGRKVLSDINWTIREGERWALTGSNGSGKTTLLAYVVGDHPKL 317
Query: 431 DSGNVWVLGGKPGEKGSGV 487
+ N+ G G G+G+
Sbjct: 318 FASNIKFFGKSIG-PGTGI 335
Score = 27.5 bits (58), Expect = 1.8
Identities = 14/51 (27%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Frame = +2
Query: 272 AVIVECANKSY--GQQNVLKDLDLTVEKGTIYGLLGPSGCGKTTLLSCIVG 418
A V+ AN ++ + + K++ + + + ++G +G G+TT L CI G
Sbjct: 2 ASFVKFANTTFLDARFPLFKNVSFELARKQNWAIIGNTGSGRTTFLRCIQG 52
>SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1396
Score = 40.3 bits (90), Expect = 2e-04
Identities = 25/110 (22%), Positives = 59/110 (53%)
Frame = +2
Query: 308 QQNVLKDLDLTVEKGTIYGLLGPSGCGKTTLLSCIVGRRSLDSGNVWVLGGKPGEKGSGV 487
++ +L ++ ++K T+ LLG + GK+ LL I+ +R + +G+V G K
Sbjct: 773 KKQILTNVSGYLKKNTLTALLGENKSGKSVLLR-ILSQRGI-AGSVEGEITLSGLKNPKN 830
Query: 488 PGPRVGYMPQDIALVGEFTVRDAVYYFGRIYGMEHKKMTERFEFLSSLLD 637
R+GY+ ++ + E+TVR+ + + + + ++E++ ++ ++D
Sbjct: 831 LRKRIGYVRKNPLFISEYTVRETLRLHAALRQSKQRSLSEQYAYVEYVID 880
>SPCC663.03 |pmd1||leptomycin efflux transporter
Pmd1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1362
Score = 39.5 bits (88), Expect = 4e-04
Identities = 40/154 (25%), Positives = 69/154 (44%), Gaps = 6/154 (3%)
Frame = +2
Query: 218 ITATSSRSQRTEMAVREAAVIVECANKSYGQQN---VLKDLDLTVEKGTIYGLLGPSGCG 388
I S+ ++ E +++ AA+ SY + VL+ L+LTV+ G +G SGCG
Sbjct: 1101 IDTWSTEGKKVE-SLQSAAIEFRQVEFSYPTRRHIKVLRGLNLTVKPGQFVAFVGSSGCG 1159
Query: 389 KTTLLSCIVGRRSLDSGNVWVLGGKPGEKGSGVPGPRVGYMPQDIALVGEFTVRDAVYYF 568
K+T + I D+G V V G + ++ + Q+ L + TVR+ +
Sbjct: 1160 KSTTIGLIERFYDCDNGAVLVDGVNVRDYNINDYRKQIALVSQEPTLY-QGTVRENI-VL 1217
Query: 569 GRIYGMEHKKMTE---RFEFLSSLLDLPSGNRLL 661
G + ++M E + +L LP+G L
Sbjct: 1218 GASKDVSEEEMIEACKKANIHEFILGLPNGYNTL 1251
>SPCC417.08 |tef3||translation elongation factor
eEF3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1047
Score = 38.3 bits (85), Expect = 0.001
Identities = 17/39 (43%), Positives = 26/39 (66%)
Frame = +2
Query: 299 SYGQQNVLKDLDLTVEKGTIYGLLGPSGCGKTTLLSCIV 415
+YG + +L L +++G YGL GP+G GK+TL+ IV
Sbjct: 443 AYGAKILLNRTRLRLKRGRRYGLCGPNGSGKSTLMRAIV 481
Score = 29.9 bits (64), Expect = 0.35
Identities = 12/43 (27%), Positives = 22/43 (51%)
Frame = +2
Query: 320 LKDLDLTVEKGTIYGLLGPSGCGKTTLLSCIVGRRSLDSGNVW 448
L D+ V + ++GP+G GK+TL+ + G G ++
Sbjct: 690 LNDISFQVSLSSRIAVIGPNGAGKSTLIKVLTGELLPTVGEIY 732
>SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1057
Score = 37.9 bits (84), Expect = 0.001
Identities = 17/55 (30%), Positives = 33/55 (60%)
Frame = +2
Query: 248 TEMAVREAAVIVECANKSYGQQNVLKDLDLTVEKGTIYGLLGPSGCGKTTLLSCI 412
+ + + E ++ + +YG + +L +L + +G YG++G +GCGK+TLL I
Sbjct: 436 SNLTIEEEELVNTDFSLAYGGRLLLSHTNLHLYRGHRYGVVGHNGCGKSTLLRAI 490
Score = 31.9 bits (69), Expect = 0.086
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
Frame = +2
Query: 275 VIVECANKSYGQQNVLK-DLD-LTV--EKGTIYGLLGPSGCGKTTLLSCIVGRRSLDSGN 442
+I++ N SY N K LD +TV + +LGP+G GK+TL+ ++G G
Sbjct: 690 LILKMTNASYTYPNAKKKSLDNVTVGLSLSSRVAILGPNGAGKSTLIKVLIGEVIPQEGK 749
Query: 443 VW 448
V+
Sbjct: 750 VF 751
>SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase
Abc4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1469
Score = 37.5 bits (83), Expect = 0.002
Identities = 27/104 (25%), Positives = 52/104 (50%)
Frame = +2
Query: 320 LKDLDLTVEKGTIYGLLGPSGCGKTTLLSCIVGRRSLDSGNVWVLGGKPGEKGSGVPGPR 499
L+DL++ + + ++GP+G GK++L+S ++G SL+ G+ P KG
Sbjct: 631 LRDLNIVFPRNKLSIVIGPTGSGKSSLISALLGELSLNKGSY----NLPRSKG------- 679
Query: 500 VGYMPQDIALVGEFTVRDAVYYFGRIYGMEHKKMTERFEFLSSL 631
V Y+ Q + + T+RD + + +KK+ + L+ L
Sbjct: 680 VSYVSQ-VPWLRNATIRDNILFDYPYIEERYKKVIQACGLLTDL 722
Score = 34.3 bits (75), Expect = 0.016
Identities = 20/88 (22%), Positives = 41/88 (46%), Gaps = 2/88 (2%)
Frame = +2
Query: 263 REAAVIVECANKSYGQQN--VLKDLDLTVEKGTIYGLLGPSGCGKTTLLSCIVGRRSLDS 436
+E ++ + SY +LKD++L + ++G +G GK+TL ++ S
Sbjct: 1208 KEGDIVFNHVSVSYSAAGPTILKDVNLHINPSEKVAVVGRTGSGKSTLGLTLLRFTHRIS 1267
Query: 437 GNVWVLGGKPGEKGSGVPGPRVGYMPQD 520
G +++ G + R+ ++PQD
Sbjct: 1268 GEIYINGRETQSVNLNALRQRISFIPQD 1295
>SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 736
Score = 35.5 bits (78), Expect = 0.007
Identities = 15/43 (34%), Positives = 28/43 (65%)
Frame = +2
Query: 317 VLKDLDLTVEKGTIYGLLGPSGCGKTTLLSCIVGRRSLDSGNV 445
+LK +D+ V+ + G++GP+G GK+T+L ++ + SG V
Sbjct: 533 ILKHVDIDVQMDSRIGVVGPNGAGKSTMLKLLIEQLHPTSGIV 575
Score = 33.5 bits (73), Expect = 0.028
Identities = 18/64 (28%), Positives = 30/64 (46%)
Frame = +2
Query: 299 SYGQQNVLKDLDLTVEKGTIYGLLGPSGCGKTTLLSCIVGRRSLDSGNVWVLGGKPGEKG 478
++ +L LT+ +G YGL G +G GK+TLL + R ++ +L + G
Sbjct: 191 AFAGHRILTGASLTLAQGRRYGLTGRNGIGKSTLLRALSRREIAIPTHITILHVEQEMTG 250
Query: 479 SGVP 490
P
Sbjct: 251 DDTP 254
>SPCC825.01 |||ribosome biogenesis ATPase, Arb family
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 822
Score = 35.5 bits (78), Expect = 0.007
Identities = 15/32 (46%), Positives = 22/32 (68%)
Frame = +2
Query: 317 VLKDLDLTVEKGTIYGLLGPSGCGKTTLLSCI 412
++KD +L + G YGL+ P+G GK+TLL I
Sbjct: 290 LIKDSELNLINGRRYGLIAPNGSGKSTLLHAI 321
Score = 30.7 bits (66), Expect = 0.20
Identities = 14/47 (29%), Positives = 26/47 (55%)
Frame = +2
Query: 305 GQQNVLKDLDLTVEKGTIYGLLGPSGCGKTTLLSCIVGRRSLDSGNV 445
G + L+ ++ + L+GP+G GKTTL+ I+ + +G+V
Sbjct: 605 GGPTIFSKLNFGLDLKSRVALVGPNGAGKTTLIKLILEKVQPSTGSV 651
>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
Abc2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1463
Score = 34.7 bits (76), Expect = 0.012
Identities = 15/46 (32%), Positives = 26/46 (56%)
Frame = +2
Query: 320 LKDLDLTVEKGTIYGLLGPSGCGKTTLLSCIVGRRSLDSGNVWVLG 457
L+D+D +G + ++G G GK++LL +G SG+V+ G
Sbjct: 599 LRDIDFVARRGELCCIVGKVGMGKSSLLEACLGNMQKHSGSVFRCG 644
>SPAC15A10.01 |atm1|SPAC8C9.18|ABC family iron transporter
Atm1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 693
Score = 34.7 bits (76), Expect = 0.012
Identities = 20/97 (20%), Positives = 41/97 (42%), Gaps = 1/97 (1%)
Frame = +2
Query: 251 EMAVREAAVIVECANKSYGQQN-VLKDLDLTVEKGTIYGLLGPSGCGKTTLLSCIVGRRS 427
++ ++ ++ + + SY +L + G +G SGCGK+T+L +
Sbjct: 435 DLVLKGGSIQFDNVHFSYNPNRPILNGCSFNIPAGAKVAFVGASGCGKSTILRLLFRFYD 494
Query: 428 LDSGNVWVLGGKPGEKGSGVPGPRVGYMPQDIALVGE 538
DSG + + + + +G +PQD L +
Sbjct: 495 TDSGKILIDNQRLDQITLNSLRKAIGVVPQDTPLFND 531
>SPAC20G4.01 ||SPAC22F8.13|CCR4-Not complex subunit
Caf16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 280
Score = 33.9 bits (74), Expect = 0.021
Identities = 28/107 (26%), Positives = 48/107 (44%)
Frame = +2
Query: 320 LKDLDLTVEKGTIYGLLGPSGCGKTTLLSCIVGRRSLDSGNVWVLGGKPGEKGSGVPGPR 499
L + L + KG+ L+G +G GK+TLL + G+ +G++ V G P + S
Sbjct: 20 LDHVTLDLPKGSRTLLVGANGAGKSTLLKLLSGKSLAKAGHISVGGKDPFRESSS----- 74
Query: 500 VGYMPQDIALVGEFTVRDAVYYFGRIYGMEHKKMTERFEFLSSLLDL 640
++ V + + I + K ER +FL S+LD+
Sbjct: 75 -AFVYLGTEWVNNPVIHRDMSVARLIASVGGDKFAERRDFLISILDI 120
>SPBC16H5.08c |||ribosome biogenesis ATPase, Arb family
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 618
Score = 31.1 bits (67), Expect = 0.15
Identities = 13/41 (31%), Positives = 24/41 (58%)
Frame = +2
Query: 299 SYGQQNVLKDLDLTVEKGTIYGLLGPSGCGKTTLLSCIVGR 421
S+ + ++++ + + G YGLLG +G GK+T L + R
Sbjct: 84 SFHGRLLIENATIELNHGQRYGLLGDNGSGKSTFLESVAAR 124
Score = 29.5 bits (63), Expect = 0.46
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = +2
Query: 323 KDLDLTVEKGTIYGLLGPSGCGKTTLLSCIVGRRSLDSGNV 445
+DL ++ + ++G +G GK+TLL+ I G GNV
Sbjct: 407 RDLSFGIDMDSRVAIVGKNGTGKSTLLNLITGLLIPIEGNV 447
>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1336
Score = 30.3 bits (65), Expect = 0.26
Identities = 13/44 (29%), Positives = 27/44 (61%)
Frame = +2
Query: 320 LKDLDLTVEKGTIYGLLGPSGCGKTTLLSCIVGRRSLDSGNVWV 451
L ++ + + G + ++GPSG GK+T +S ++ S GN+++
Sbjct: 452 LINVSVFIPFGELVHIIGPSGSGKSTFISLLLRYFSPTYGNIYL 495
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 29.5 bits (63), Expect = 0.46
Identities = 28/84 (33%), Positives = 39/84 (46%), Gaps = 10/84 (11%)
Frame = -2
Query: 537 SPTKAMSCGIYPTLGP--GTPLPFSPGFPPST---QTLPLSRLRLPTMQESNV-----VF 388
S +A+S I PT P PLP P PP T Q+ S+L +P+ +N+ +
Sbjct: 214 SSGRAVSPEIPPTYTPKQADPLPAPPPPPPPTLPPQSTNTSQLPMPSRNVNNLGSQVNIP 273
Query: 387 PQPDGPSSPYIVPFSTVKSRSLST 316
P P PS P P + +RS T
Sbjct: 274 PPPATPSQPPRPP-TNASTRSTGT 296
>SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 496
Score = 28.7 bits (61), Expect = 0.80
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +2
Query: 341 VEKGTIYGLLGPSGCGKTTLLSCIVGRR 424
+ KG +LGPS GK++L++ + RR
Sbjct: 236 LRKGINVAILGPSNAGKSSLINLLANRR 263
>SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1063
Score = 27.9 bits (59), Expect = 1.4
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = -3
Query: 260 PPSLFVDFAKMSP*FIDTFSTEITNASPPFTF 165
PP VD++ P +DT ST ++ASPP F
Sbjct: 511 PPVSQVDYSNNLPPNLDTSSTFRSSASPPSAF 542
>SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 983
Score = 27.9 bits (59), Expect = 1.4
Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
Frame = -1
Query: 511 HISHSGAR--HTAALLSWLPTKHPDIATI 431
HI+HS R +T AL S L T HPD+ +
Sbjct: 851 HINHSKDRKLNTLALSSLLRTNHPDVLAV 879
>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 4924
Score = 27.5 bits (58), Expect = 1.8
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = +1
Query: 352 HYIWAAWSVGLWENDVALLHSRKT 423
H I+ WS+ L ND+A L SRKT
Sbjct: 3467 HGIYDGWSLDLLLNDLARLCSRKT 3490
>SPBC902.06 |mto2||MT organizer Mto2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 397
Score = 27.5 bits (58), Expect = 1.8
Identities = 21/66 (31%), Positives = 28/66 (42%)
Frame = -2
Query: 507 YPTLGPGTPLPFSPGFPPSTQTLPLSRLRLPTMQESNVVFPQPDGPSSPYIVPFSTVKSR 328
YP+L P T P SP P ST L RLR T S ++ + + I +T S
Sbjct: 167 YPSLLPSTHSPHSPA-PLSTMQTALMRLR--TYHPSPIILKPVEQAVNHAITLVNTSPSS 223
Query: 327 SLSTFC 310
+ C
Sbjct: 224 VVDALC 229
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 27.5 bits (58), Expect = 1.8
Identities = 22/71 (30%), Positives = 29/71 (40%), Gaps = 2/71 (2%)
Frame = -2
Query: 534 PTKAMSCGIY--PTLGPGTPLPFSPGFPPSTQTLPLSRLRLPTMQESNVVFPQPDGPSSP 361
PT + Y PT+ +P SP P LP RLP + + PQP P
Sbjct: 1024 PTASQRASAYEPPTVSVPSPSALSPSVTPQ---LPPVSSRLPPVSATRPQIPQP--PPVS 1078
Query: 360 YIVPFSTVKSR 328
+P S+ SR
Sbjct: 1079 TALPSSSAVSR 1089
>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 27.5 bits (58), Expect = 1.8
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +1
Query: 241 STNRDGGPRSSSYRRVCQQVIWTTERAQRPRLDRRKGHY 357
S N+DGG R ++YR + R RP+ + G+Y
Sbjct: 204 SNNKDGGYRRNNYRDRDSNRYRNSYRPSRPQREHSPGNY 242
>SPAC32A11.03c |phx1||homeobox transcription factor
Phx1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 942
Score = 27.5 bits (58), Expect = 1.8
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = -2
Query: 459 PPSTQTLPLSRLRLPTMQESNVVFPQPDGPSS 364
PPS+ PL+ +R+P + +P+ PSS
Sbjct: 362 PPSSYATPLTGIRMPQPESDLYSYPREVSPSS 393
>SPAC821.06 |spn2||septin Spn2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 331
Score = 27.1 bits (57), Expect = 2.4
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +2
Query: 365 LLGPSGCGKTTLLSCIVGRRSLDS 436
++GPSG GK+TL++ + +DS
Sbjct: 37 VVGPSGSGKSTLINTLFSAHLMDS 60
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 26.6 bits (56), Expect = 3.2
Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Frame = -2
Query: 504 PTLGPGTPLPFSPGFPPSTQTLPLSRLRLPTMQESNVVFPQ-PDG-PSSPYIVP 349
P+L P P P PPS LP+ P + S + P P G P++P + P
Sbjct: 421 PSLPPSAPPSLPPSAPPS---LPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPP 471
>SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein
Bms1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1121
Score = 26.6 bits (56), Expect = 3.2
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +2
Query: 356 IYGLLGPSGCGKTTLLSCIVGRRS 427
I ++GP G GK+TL+ +V R S
Sbjct: 76 IVAVMGPPGTGKSTLIKSLVRRYS 99
>SPBC9B6.09c |mdl1||mitochondrial peptide-transporting
ATPase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 726
Score = 26.6 bits (56), Expect = 3.2
Identities = 11/44 (25%), Positives = 23/44 (52%)
Frame = +2
Query: 314 NVLKDLDLTVEKGTIYGLLGPSGCGKTTLLSCIVGRRSLDSGNV 445
++ +L + GT ++ PSG GK+T+ ++ + SG +
Sbjct: 498 SIFDNLSFDIHPGTNVAIVAPSGGGKSTISQLLLRFYAPSSGKI 541
>SPAC2H10.01 |||transcription factor, zf-fungal binuclear cluster
type|Schizosaccharomyces pombe|chr 1|||Manual
Length = 480
Score = 26.6 bits (56), Expect = 3.2
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = -3
Query: 467 LASHQAPRHCHYQGSVFRLCRRATSFSHSPT 375
LA +A CH+ + +R CR+ ++ H P+
Sbjct: 37 LACQKAHADCHFSTTSWRACRKKSAPLHCPS 67
>SPAP8A3.11c |||mitochondrial GTPase Mtg2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 419
Score = 26.2 bits (55), Expect = 4.3
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +2
Query: 362 GLLGPSGCGKTTLLSCIVGRRS 427
GL+G GK+TLL+C+ +S
Sbjct: 240 GLVGLPNAGKSTLLNCLTASKS 261
>SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|chr
3|||Manual
Length = 862
Score = 26.2 bits (55), Expect = 4.3
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = -2
Query: 459 PPSTQTLPLSRLRLPTMQESNVVFPQPDGPSSPY 358
PP TQ L + T S+++ P PSSPY
Sbjct: 664 PPVTQASSLVPSKNNTASSSSLMLDSPVTPSSPY 697
>SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1254
Score = 25.8 bits (54), Expect = 5.6
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = +2
Query: 287 CANKSYGQQNVLKDLDLTVEKGTIYGLLGPSGCGKTTLL 403
C N S V D+ L E + L GP+ GK+TLL
Sbjct: 996 CINASAASTFVPNDVVLGGESPNMIVLTGPNMAGKSTLL 1034
>SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 565
Score = 25.8 bits (54), Expect = 5.6
Identities = 9/33 (27%), Positives = 22/33 (66%)
Frame = -1
Query: 595 LMLHAVYSTEVVYSISDRELSN*SYVLRHISHS 497
L+LH V+ + ++ + +R+ + +V++HI+ S
Sbjct: 394 LLLHFVWKSALICVLCERKFQSWGHVVKHITQS 426
>SPAC9G1.07 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 418
Score = 25.8 bits (54), Expect = 5.6
Identities = 17/45 (37%), Positives = 21/45 (46%)
Frame = -2
Query: 666 ILKSRFPLGRSSNELRNSKRSVIFLCSMPYIRPK*YTASLTVNSP 532
+LK L N K +V+F S Y + K TAS T NSP
Sbjct: 122 LLKEHMTLWNQERSNVNRKSNVLFCWSTAYQKQKRKTASYT-NSP 165
>SPAC890.05 |||ribosome biogenesis protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 284
Score = 25.8 bits (54), Expect = 5.6
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = -1
Query: 136 KKKHSQSNSRKKKMNAGNIETYRKELFKL 50
KKK +S+S+K+K + + E +K+ KL
Sbjct: 204 KKKDKESSSKKRKSGSSDKEEKKKKKIKL 232
>SPBC16D10.02 |trm11||tRNA |Schizosaccharomyces pombe|chr 2|||Manual
Length = 452
Score = 25.8 bits (54), Expect = 5.6
Identities = 9/16 (56%), Positives = 14/16 (87%)
Frame = -3
Query: 233 KMSP*FIDTFSTEITN 186
K+SP F+DTF+ ++TN
Sbjct: 288 KLSPFFLDTFTGDVTN 303
>SPAC1486.01 |||manganese superoxide dismutase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 218
Score = 25.4 bits (53), Expect = 7.5
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = +1
Query: 313 ERAQRPRLDRRKGHYIWAAWSVGLWE 390
E A P+ + RK Y A W+V W+
Sbjct: 184 EHAYYPQYENRKAEYFKAIWNVINWK 209
>SPCC162.11c |||uridine kinase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 454
Score = 25.4 bits (53), Expect = 7.5
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +2
Query: 362 GLLGPSGCGKTTLLSCIV 415
G+ GPSG GKT++ IV
Sbjct: 25 GIAGPSGSGKTSVAQLIV 42
>SPAC644.07 |||Rieske ISP assembly protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 449
Score = 25.4 bits (53), Expect = 7.5
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = +2
Query: 359 YGLLGPSGCGKTTLLSCIVGRRSLD 433
Y L GP G GKT+ L + G D
Sbjct: 245 YLLYGPPGSGKTSFLYALAGELDYD 269
>SPAC630.09c |mug58||glycerate kinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 277
Score = 25.4 bits (53), Expect = 7.5
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +2
Query: 356 IYGLLGPSGCGKTTLLSCI 412
I G+ GP G GK+TL S +
Sbjct: 27 ILGISGPQGSGKSTLASAL 45
>SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 647
Score = 25.4 bits (53), Expect = 7.5
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = +2
Query: 341 VEKGTIYGLLGPSGCGKTT 397
VE+ I +LG +GCGKTT
Sbjct: 38 VEQNQITIVLGHTGCGKTT 56
>SPCC24B10.10c |||mitochondrial outer membrane ATPase Msp1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 355
Score = 25.4 bits (53), Expect = 7.5
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = +2
Query: 335 LTVEKGTIYGLLGPSGCGKTTLLSCIVGRRSLDSGNVWV 451
L+ KG + L GP GCGKT L + + NV V
Sbjct: 122 LSCPKGLL--LYGPPGCGKTMLAKALAKQSQATFINVSV 158
>SPAP27G11.14c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 689
Score = 25.0 bits (52), Expect = 9.9
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = -2
Query: 663 LKSRFPLGRSSNELRNSKRSVIFLCSMPYIRPK*YT 556
LK+ LG +RN S IF CS YIR + Y+
Sbjct: 602 LKAVQKLGGLQCIIRNDNLSHIFNCSRKYIRVQRYS 637
>SPCC14G10.04 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 497
Score = 25.0 bits (52), Expect = 9.9
Identities = 11/19 (57%), Positives = 12/19 (63%), Gaps = 1/19 (5%)
Frame = -2
Query: 504 PTLGPGTP-LPFSPGFPPS 451
P G P P+SPGFPPS
Sbjct: 460 PGFGYQQPSFPYSPGFPPS 478
>SPAC1D4.12 |rad15|rhp3|transcription factor TFIIH complex subunit
Rad15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 772
Score = 25.0 bits (52), Expect = 9.9
Identities = 17/37 (45%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = +2
Query: 308 QQNVLKDLDLTVEKGTIYGLLGPSGCGKT-TLLSCIV 415
Q + DL +++ G I L PSG GKT +LLS IV
Sbjct: 21 QYQYMCDLKHSLDAGGIALLEMPSGTGKTISLLSLIV 57
>SPBC1683.04 |||glycosyl hydrolase family 3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 832
Score = 25.0 bits (52), Expect = 9.9
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +2
Query: 500 VGYMPQDIALVGEFTVRDAVYYFG 571
VG +DIAL G+FT+ +++ G
Sbjct: 808 VGTSSKDIALTGKFTLPKTIHWTG 831
>SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 937
Score = 25.0 bits (52), Expect = 9.9
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +2
Query: 371 GPSGCGKTTLLSCIVGRRSLDS 436
GP GCGK+ L+ + SL+S
Sbjct: 379 GPKGCGKSNLVHSLFDYYSLNS 400
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,852,309
Number of Sequences: 5004
Number of extensions: 61351
Number of successful extensions: 294
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 273
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 291
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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