Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV31997
(700 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC306.08c |||malate dehydrogenase|Schizosaccharomyces pombe|ch... 144 8e-36
SPAC186.08c |||L-lactate dehydrogenase |Schizosaccharomyces pomb... 53 5e-08
SPAC23H3.05c |swd1||COMPASS complex subunit Swd1|Schizosaccharom... 29 0.64
SPBC3B8.07c |dsd1|SDCB3B8.07c|dihydroceramide delta-4 desaturase... 27 2.6
SPBC18H10.04c |sce3|tif48|translation initiation factor eIF4B|Sc... 26 4.5
SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2 |Schiz... 26 4.5
SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyc... 26 6.0
SPAC11D3.06 |||MatE family transporter|Schizosaccharomyces pombe... 25 7.9
>SPCC306.08c |||malate dehydrogenase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 341
Score = 144 bits (350), Expect = 8e-36
Identities = 73/133 (54%), Positives = 93/133 (69%), Gaps = 1/133 (0%)
Frame = +3
Query: 108 KNFSTTSQRNFKXXXXXXXXXIGQPLALLLKQNPLVTRLALYDIAPVTPGVAADLSHVNT 287
++FSTTS R FK IGQPL++LLK N V+ LAL+DI PGVAAD+ H+NT
Sbjct: 19 RSFSTTSSRAFKVAVLGAGGGIGQPLSMLLKLNDKVSELALFDIRGA-PGVAADIGHINT 77
Query: 288 PAKVSGHKGPEE-LSAAIKDADVVVIPAGVPRKPGMTRDDLFNTNASIVRDIALSIAQNA 464
+ V G+ ++ L A+ ADVV+IPAGVPRKPGMTRDDLF TNASIVRD+A + +
Sbjct: 78 TSNVVGYAPDDKGLEKALNGADVVIIPAGVPRKPGMTRDDLFATNASIVRDLAFAAGETC 137
Query: 465 PKAIVAIITNPVN 503
P+A ++TNPVN
Sbjct: 138 PEAKYLVVTNPVN 150
Score = 46.8 bits (106), Expect = 3e-06
Identities = 21/45 (46%), Positives = 31/45 (68%), Gaps = 1/45 (2%)
Frame = +1
Query: 499 LTSTVPIASEVLKKAGVYDPNRVLGVTTLDVVRAATFVGEI-NGR 630
+ STVPI + L++ GV+ P + GVTTLD VRA+ F ++ NG+
Sbjct: 149 VNSTVPIFKKALERVGVHQPKHLFGVTTLDSVRASRFTSQVTNGK 193
>SPAC186.08c |||L-lactate dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 330
Score = 52.8 bits (121), Expect = 5e-08
Identities = 47/141 (33%), Positives = 65/141 (46%), Gaps = 7/141 (4%)
Frame = +3
Query: 102 GAKNFSTTSQRN--FKXXXXXXXXX--IGQPLALLLKQNPLVTRLALYDI-APVTPGVAA 266
G+K FS S R+ FK +G A L + L + + D+ G A
Sbjct: 4 GSKVFSNDSVRSSSFKSIKIVIVGAGNVGSTTAFTLLLSGLAAEIVIIDLNKKKAEGEAM 63
Query: 267 DLSHVNTPAKVSGHKGPEELS--AAIKDADVVVIPAGVPRKPGMTRDDLFNTNASIVRDI 440
DL+H A +S H+ L KDA VVI AG +KPG TR DL N SI ++I
Sbjct: 64 DLNHA---APLS-HETRVYLGDYKDCKDATAVVITAGKNQKPGETRMDLLKANISIFKEI 119
Query: 441 ALSIAQNAPKAIVAIITNPVN 503
+ + AI+ + TNPV+
Sbjct: 120 LREVTKYTKDAILLVATNPVD 140
>SPAC23H3.05c |swd1||COMPASS complex subunit
Swd1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 398
Score = 29.1 bits (62), Expect = 0.64
Identities = 19/61 (31%), Positives = 28/61 (45%)
Frame = -3
Query: 545 PAFLSTSEAIGTVEVNRVCDDGHNSFGCILSNGQSNVTDNGSISVE*VITGHSRFTGYSC 366
P L+T+ G R +G++ L NG + D + SV V+TGH+R C
Sbjct: 15 PEALTTTLKHGHATSIRFSTNGYH-LASGLVNGSVVIWDLSTFSVSRVLTGHTRAIQSVC 73
Query: 365 W 363
W
Sbjct: 74 W 74
>SPBC3B8.07c |dsd1|SDCB3B8.07c|dihydroceramide delta-4
desaturase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 362
Score = 27.1 bits (57), Expect = 2.6
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = +2
Query: 86 PCCTKWCKELFHHITEEL*SGGRWCR 163
P C WC ++ IT+ + G WCR
Sbjct: 319 PDCKSWCGIIYQFITDS--NVGMWCR 342
>SPBC18H10.04c |sce3|tif48|translation initiation factor
eIF4B|Schizosaccharomyces pombe|chr 2|||Manual
Length = 388
Score = 26.2 bits (55), Expect = 4.5
Identities = 19/56 (33%), Positives = 22/56 (39%), Gaps = 1/56 (1%)
Frame = +2
Query: 143 SGGRWCRRWYRPAFGPSTEAESSG-DQAGFIRHSACDPRRRSRPFPREHPSQGQRP 307
S G W RR P P+ +G R A DP R R PRE +G P
Sbjct: 179 STGDWVRRGPLPPAEPAESPFGKRRTNSGRFRDPARDPSDRVREEPREWVRRGPLP 234
>SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1273
Score = 26.2 bits (55), Expect = 4.5
Identities = 13/49 (26%), Positives = 24/49 (48%)
Frame = -2
Query: 663 RMTGTATEVGSTPIDLADEGGSADYVQSGDAEHAVRVVHSRLLEHFRGN 517
R+ E G PI +AD S + H ++ +HS +++HF+ +
Sbjct: 904 RIWNMLPETG-VPILVADINPQMTSSSSNETSHLIQELHSLIVDHFQND 951
>SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 489
Score = 25.8 bits (54), Expect = 6.0
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +2
Query: 74 KTCRPCCTKWCKELFHHITEEL*SGGRWCRRWY 172
K C+ C + C+ +HHI E+L CRR Y
Sbjct: 33 KPCQ-CGYRVCRFCWHHIKEDLNGRCPACRRLY 64
>SPAC11D3.06 |||MatE family transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 455
Score = 25.4 bits (53), Expect = 7.9
Identities = 15/36 (41%), Positives = 18/36 (50%)
Frame = +3
Query: 228 LYDIAPVTPGVAADLSHVNTPAKVSGHKGPEELSAA 335
L + APV G A S + V+G GP ELS A
Sbjct: 12 LINSAPVILGYALQNSLQTSSVIVTGRLGPSELSVA 47
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,823,403
Number of Sequences: 5004
Number of extensions: 58302
Number of successful extensions: 161
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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