Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31997
         (700 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF002197-5|AAB53985.1|  341|Caenorhabditis elegans Malate dehydr...   170   7e-43
U39676-5|AAN60531.1| 2329|Caenorhabditis elegans Hypothetical pr...    31   0.79 
U39676-4|AAN60532.1| 2747|Caenorhabditis elegans Hypothetical pr...    31   0.79 
Z70038-3|CAA93883.2|  541|Caenorhabditis elegans Hypothetical pr...    29   4.2  
Z66567-2|CAA91488.1| 1118|Caenorhabditis elegans Hypothetical pr...    27   9.8  
AC006669-1|AAF39909.1| 1203|Caenorhabditis elegans Hypothetical ...    27   9.8  

>AF002197-5|AAB53985.1|  341|Caenorhabditis elegans Malate
           dehydrogenase protein 1 protein.
          Length = 341

 Score =  170 bits (414), Expect = 7e-43
 Identities = 81/111 (72%), Positives = 97/111 (87%)
 Frame = +3

Query: 171 IGQPLALLLKQNPLVTRLALYDIAPVTPGVAADLSHVNTPAKVSGHKGPEELSAAIKDAD 350
           IGQPL LLLKQ+PLV  LALYD+   TPGVAADLSH+++ AKV+ H GP+EL AA+++AD
Sbjct: 40  IGQPLGLLLKQDPLVAHLALYDVVN-TPGVAADLSHIDSNAKVTAHTGPKELYAAVENAD 98

Query: 351 VVVIPAGVPRKPGMTRDDLFNTNASIVRDIALSIAQNAPKAIVAIITNPVN 503
           V+VIPAGVPRKPGMTRDDLFNTNA IVRD+A  IA+ +PKA++AIITNPVN
Sbjct: 99  VIVIPAGVPRKPGMTRDDLFNTNAGIVRDLAAVIAKASPKALIAIITNPVN 149



 Score = 71.7 bits (168), Expect = 5e-13
 Identities = 36/54 (66%), Positives = 39/54 (72%)
 Frame = +1

Query: 466 PKLLWPSSQTLLTSTVPIASEVLKKAGVYDPNRVLGVTTLDVVRAATFVGEING 627
           PK L       + STVPIASEVLKKAGVYDP RV GVTTLDVVR+  FV E+ G
Sbjct: 137 PKALIAIITNPVNSTVPIASEVLKKAGVYDPKRVFGVTTLDVVRSQAFVSELKG 190


>U39676-5|AAN60531.1| 2329|Caenorhabditis elegans Hypothetical protein
            C23F12.1a protein.
          Length = 2329

 Score = 31.1 bits (67), Expect = 0.79
 Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
 Frame = +3

Query: 201  QNPLVT-RLALYDIAPVTPGVAADLSHVNTPAKVS---GHKGPEELSAAIKDADVVVIPA 368
            Q+PL    + +YD + +  G   + S++N   + +   G  G   L  AIKDAD V+IP+
Sbjct: 980  QHPLSPFAVRVYDASEIIVGEIPNQSNLNDTVEFTVDAGRAGFGNLEMAIKDADGVIIPS 1039

Query: 369  GV 374
             V
Sbjct: 1040 HV 1041


>U39676-4|AAN60532.1| 2747|Caenorhabditis elegans Hypothetical protein
            C23F12.1b protein.
          Length = 2747

 Score = 31.1 bits (67), Expect = 0.79
 Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
 Frame = +3

Query: 201  QNPLVT-RLALYDIAPVTPGVAADLSHVNTPAKVS---GHKGPEELSAAIKDADVVVIPA 368
            Q+PL    + +YD + +  G   + S++N   + +   G  G   L  AIKDAD V+IP+
Sbjct: 980  QHPLSPFAVRVYDASEIIVGEIPNQSNLNDTVEFTVDAGRAGFGNLEMAIKDADGVIIPS 1039

Query: 369  GV 374
             V
Sbjct: 1040 HV 1041


>Z70038-3|CAA93883.2|  541|Caenorhabditis elegans Hypothetical
           protein ZK1067.4 protein.
          Length = 541

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -2

Query: 138 SSSVMWWKSSLHHFVQQGRQV 76
           S  ++WWKS  +H+ ++ RQV
Sbjct: 120 SPPIVWWKSVCYHYTRKTRQV 140


>Z66567-2|CAA91488.1| 1118|Caenorhabditis elegans Hypothetical
           protein ZK455.2 protein.
          Length = 1118

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 13/46 (28%), Positives = 23/46 (50%)
 Frame = +3

Query: 387 GMTRDDLFNTNASIVRDIALSIAQNAPKAIVAIITNPVNFYSAYCL 524
           G   D LFN    + R+  +S A++  K +  + T+P+  +   CL
Sbjct: 635 GSLEDILFNDELKLGRNFQVSFAKDVVKGLNFLHTSPLLHHGMLCL 680


>AC006669-1|AAF39909.1| 1203|Caenorhabditis elegans Hypothetical
           protein H43E16.1 protein.
          Length = 1203

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 18/60 (30%), Positives = 27/60 (45%)
 Frame = -1

Query: 400 SRVIPGLRGTPAGMTTTSASLMAADSSSGPLWPLTLAGVFTWERSAATPGVTGAMSYKAS 221
           S+  PG+     GMTT+ ASL +  +S       +  G FT   +       GAM+  +S
Sbjct: 418 SQTTPGVSSASTGMTTSQASLRSTQNS-----VTSTPGSFTVTSTPTITSTQGAMASSSS 472


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,254,234
Number of Sequences: 27780
Number of extensions: 363339
Number of successful extensions: 1004
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 948
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1003
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)