Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31992
         (660 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||...    94   1e-20
SPAC11D3.15 |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||M...    93   3e-20
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic...    27   1.8  
SPBC18E5.10 |||iron sulfur cluster assembly protein |Schizosacch...    26   4.2  
SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr...    25   7.3  

>SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1260

 Score = 94.3 bits (224), Expect = 1e-20
 Identities = 41/65 (63%), Positives = 50/65 (76%)
 Frame = +2

Query: 5   EVAMGFINVANEAMCRPIRALTTARGHDAAQHALACFGGAGGQHACSVARRLGISTVLIH 184
           E+AMGFI VANE MCRPIR LT +RG D + H LA FGGAGGQHAC++A  L I  ++IH
Sbjct: 445 EIAMGFIQVANETMCRPIRKLTESRGLDLSAHHLAVFGGAGGQHACAIASLLNIEKIIIH 504

Query: 185 KYAGM 199
           KY+ +
Sbjct: 505 KYSSV 509



 Score = 34.3 bits (75), Expect = 0.016
 Identities = 13/19 (68%), Positives = 17/19 (89%)
 Frame = +3

Query: 603 SSILSAYGMALAHIVHERR 659
           SS+LSAYG+ALAH+ HE +
Sbjct: 507 SSVLSAYGLALAHVTHEEQ 525


>SPAC11D3.15 |||oxoprolinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1317

 Score = 93.1 bits (221), Expect = 3e-20
 Identities = 40/65 (61%), Positives = 50/65 (76%)
 Frame = +2

Query: 5   EVAMGFINVANEAMCRPIRALTTARGHDAAQHALACFGGAGGQHACSVARRLGISTVLIH 184
           EVA GFI +ANE M RPIRALT A+GHD + H L  FGGAGGQH  ++A+ LGI+ VL+H
Sbjct: 462 EVAFGFIKIANETMARPIRALTEAKGHDISIHRLTSFGGAGGQHCAAIAKSLGITQVLVH 521

Query: 185 KYAGM 199
           KY+ +
Sbjct: 522 KYSSI 526



 Score = 30.7 bits (66), Expect = 0.19
 Identities = 20/43 (46%), Positives = 29/43 (67%)
 Frame = +3

Query: 525 CSYIAS*YARGVSDLVLHWRRYMFLCSSILSAYGMALAHIVHE 653
           C+ IA   + G++ +++H  +Y    SSILSAYGMALA +V E
Sbjct: 506 CAAIAK--SLGITQVLVH--KY----SSILSAYGMALADVVSE 540


>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
           subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1729

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 16/51 (31%), Positives = 21/51 (41%)
 Frame = +1

Query: 424 CLYILLWWVAIIHHKIFDRCLNLAYDIFYDRYVFVRTSQVDTHGAFQTSFY 576
           CLY L W  A  + +    CL   ++  YD Y+      VD   A    FY
Sbjct: 191 CLYFLCWGEAN-NVRFVPECLCFIFECAYDYYISSEAKDVD--AALPKEFY 238


>SPBC18E5.10 |||iron sulfur cluster assembly protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 15/43 (34%), Positives = 18/43 (41%)
 Frame = -1

Query: 645 LCGPGPYRMPTGYLSIETCTAASVERGLKRPVRINLRCTNKDI 517
           L G G Y  PTG   +    A S ERG K    + +     DI
Sbjct: 78  LRGRGRYGFPTGEKMLSLYKATSSERGRKEKPVVIVNAAENDI 120


>SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 585

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 9/15 (60%), Positives = 13/15 (86%)
 Frame = +1

Query: 424 CLYILLWWVAIIHHK 468
           CLYIL W++A+I +K
Sbjct: 291 CLYILEWFLALIFNK 305


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,535,944
Number of Sequences: 5004
Number of extensions: 49645
Number of successful extensions: 129
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)