Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV31992
(660 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC025715-10|ABJ99061.1| 1187|Caenorhabditis elegans Hypothetical... 100 1e-21
AC024765-7|AAP31427.1| 130|Caenorhabditis elegans Smn (survival... 31 0.55
AC024765-6|AAF60526.2| 254|Caenorhabditis elegans Smn (survival... 31 0.55
U28991-1|AAM22059.1| 696|Caenorhabditis elegans Kinesin-associa... 29 2.9
AF149287-1|AAF99086.1| 696|Caenorhabditis elegans KAP protein. 29 2.9
Z46937-3|CAA87058.2| 457|Caenorhabditis elegans Hypothetical pr... 29 3.9
AF273771-1|AAG15120.1| 454|Caenorhabditis elegans nuclear recep... 29 3.9
Z81527-11|CAI91173.1| 390|Caenorhabditis elegans Hypothetical p... 27 8.9
Z81527-10|CAB04276.2| 218|Caenorhabditis elegans Hypothetical p... 27 8.9
>AC025715-10|ABJ99061.1| 1187|Caenorhabditis elegans Hypothetical
protein Y38F2AR.12a protein.
Length = 1187
Score = 100 bits (239), Expect = 1e-21
Identities = 44/64 (68%), Positives = 53/64 (82%)
Frame = +2
Query: 8 VAMGFINVANEAMCRPIRALTTARGHDAAQHALACFGGAGGQHACSVARRLGISTVLIHK 187
VA+GF+ VANE MCRPIR LT +RG + ++H LACFGGAGGQHAC+VA+ LGIS V IHK
Sbjct: 381 VALGFLAVANEEMCRPIRTLTQSRGFNPSEHVLACFGGAGGQHACAVAKVLGISQVRIHK 440
Query: 188 YAGM 199
YA +
Sbjct: 441 YASL 444
>AC024765-7|AAP31427.1| 130|Caenorhabditis elegans Smn (survival of
motor neuron)protein interactor protein 1, isoform b
protein.
Length = 130
Score = 31.5 bits (68), Expect = 0.55
Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 4/56 (7%)
Frame = -1
Query: 627 YRMPTGYLS--IETCTAASVERGLKRPVR--INLRCTNKDIPVVENVVSEIQASVK 472
+ +P +LS IE S+E GL RP+R I D+P+V++VVS ++ VK
Sbjct: 57 FSIPKRHLSQLIEYLVDWSIEEGLNRPIREWIYSLLAVIDLPLVQDVVSALRRLVK 112
>AC024765-6|AAF60526.2| 254|Caenorhabditis elegans Smn (survival of
motor neuron)protein interactor protein 1, isoform a
protein.
Length = 254
Score = 31.5 bits (68), Expect = 0.55
Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 4/56 (7%)
Frame = -1
Query: 627 YRMPTGYLS--IETCTAASVERGLKRPVR--INLRCTNKDIPVVENVVSEIQASVK 472
+ +P +LS IE S+E GL RP+R I D+P+V++VVS ++ VK
Sbjct: 160 FSIPKRHLSQLIEYLVDWSIEEGLNRPIREWIYSLLAVIDLPLVQDVVSALRRLVK 215
>U28991-1|AAM22059.1| 696|Caenorhabditis elegans Kinesin-associated
protein protein1, isoform a protein.
Length = 696
Score = 29.1 bits (62), Expect = 2.9
Identities = 19/52 (36%), Positives = 26/52 (50%)
Frame = +1
Query: 334 LFRVFFNDAYPHKKVVKRLNEQNYNTLKWSCLYILLWWVAIIHHKIFDRCLN 489
L RVF D H +V + N K+SCL+ +L +HHKI C+N
Sbjct: 157 LARVFREDWKKHFEVGTNIMNLFVNISKFSCLHGIL-----LHHKIGTLCVN 203
>AF149287-1|AAF99086.1| 696|Caenorhabditis elegans KAP protein.
Length = 696
Score = 29.1 bits (62), Expect = 2.9
Identities = 19/52 (36%), Positives = 26/52 (50%)
Frame = +1
Query: 334 LFRVFFNDAYPHKKVVKRLNEQNYNTLKWSCLYILLWWVAIIHHKIFDRCLN 489
L RVF D H +V + N K+SCL+ +L +HHKI C+N
Sbjct: 157 LARVFREDWKKHFEVGTNIMNLFVNISKFSCLHGIL-----LHHKIGTLCVN 203
>Z46937-3|CAA87058.2| 457|Caenorhabditis elegans Hypothetical
protein F43C1.4 protein.
Length = 457
Score = 28.7 bits (61), Expect = 3.9
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +2
Query: 14 MGFINVANEAMCRPIRALTTARGHDAAQHAL 106
+GF+ N+A+CRPIR L AA AL
Sbjct: 338 LGFLGRFNDAICRPIRNLKMTHVEFAALKAL 368
>AF273771-1|AAG15120.1| 454|Caenorhabditis elegans nuclear receptor
NHR-20 protein.
Length = 454
Score = 28.7 bits (61), Expect = 3.9
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +2
Query: 14 MGFINVANEAMCRPIRALTTARGHDAAQHAL 106
+GF+ N+A+CRPIR L AA AL
Sbjct: 335 LGFLGRFNDAICRPIRNLKMTHVEFAALKAL 365
>Z81527-11|CAI91173.1| 390|Caenorhabditis elegans Hypothetical
protein F35E12.9b protein.
Length = 390
Score = 27.5 bits (58), Expect = 8.9
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = +1
Query: 508 YDRYVFVRTSQVDTHGAFQTSFYTGGGTCFYAQVSC 615
YD+Y + TS+ T TS T GG + V C
Sbjct: 194 YDKYTVLMTSKGTTASGNMTSLATNGGLYTFICVDC 229
>Z81527-10|CAB04276.2| 218|Caenorhabditis elegans Hypothetical
protein F35E12.9a protein.
Length = 218
Score = 27.5 bits (58), Expect = 8.9
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = +1
Query: 508 YDRYVFVRTSQVDTHGAFQTSFYTGGGTCFYAQVSC 615
YD+Y + TS+ T TS T GG + V C
Sbjct: 134 YDKYTVLMTSKGTTASGNMTSLATNGGLYTFICVDC 169
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,263,672
Number of Sequences: 27780
Number of extensions: 288062
Number of successful extensions: 660
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 637
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 658
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1476380920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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