Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31991
         (700 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2C4.16c |rps801|rps8-1|40S ribosomal protein S8|Schizosaccha...   229   2e-61
SPAC521.05 |rps802|rps8-2|40S ribosomal protein S8|Schizosacchar...   229   4e-61

>SPAC2C4.16c |rps801|rps8-1|40S ribosomal protein
           S8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 200

 Score =  229 bits (561), Expect = 2e-61
 Identities = 118/206 (57%), Positives = 140/206 (67%)
 Frame = -1

Query: 673 MGISRDHWHKRRPXGGKRAPIRKKRKYELGRPAANTRLGPQXIHSVRSRGXNNKXRALRL 494
           MGI+RD  HKR   G KRA  RKKRK+ELGR  +NTR+GP+ IH VR RG N K RALRL
Sbjct: 1   MGITRDSRHKRSATGAKRAQYRKKRKFELGRQPSNTRIGPKRIHEVRVRGGNKKFRALRL 60

Query: 493 DXGNFSWGSECSTRKTRIIDVVYNASXNELVRTKXLVKNAIVVVDATPFRQWYESHYTLP 314
           D GNFSWGSE  ++KTRII V Y+ S NELVRT  L K+AIV +DA PFR WYE+HY + 
Sbjct: 61  DSGNFSWGSEGVSKKTRIIQVAYHPSNNELVRTNTLTKSAIVQIDAAPFRVWYETHYGIL 120

Query: 313 LGRKKGAKLTEXEEXIITKKRSQKPARKYLARQRLVKVEGAXEEQFXXGRLLACVASRPG 134
           +G  KG K T          +S+   RK+ AR    KV+ A E QF  GRL A V+SRPG
Sbjct: 121 MG-SKGKKATS-----TPNPKSKHVQRKHSARLGDSKVDSALETQFAAGRLYAVVSSRPG 174

Query: 133 QCGRADGYILEGKELEFYXRKIKSKR 56
           Q GR DGYILEG+EL FY R++  K+
Sbjct: 175 QSGRCDGYILEGEELHFYLRRMAPKK 200


>SPAC521.05 |rps802|rps8-2|40S ribosomal protein
           S8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 200

 Score =  229 bits (559), Expect = 4e-61
 Identities = 118/206 (57%), Positives = 140/206 (67%)
 Frame = -1

Query: 673 MGISRDHWHKRRPXGGKRAPIRKKRKYELGRPAANTRLGPQXIHSVRSRGXNNKXRALRL 494
           MGI+RD  HKR   G KRA  RKKRK+ELGR  +NTR+GP+ IH VR RG N K RALRL
Sbjct: 1   MGITRDSRHKRSATGAKRAQYRKKRKFELGRQPSNTRIGPKRIHEVRVRGGNKKFRALRL 60

Query: 493 DXGNFSWGSECSTRKTRIIDVVYNASXNELVRTKXLVKNAIVVVDATPFRQWYESHYTLP 314
           D GNFSWGSE  ++KTRII V Y+ S NELVRT  L K+AIV +DA PFR WYE+HY + 
Sbjct: 61  DSGNFSWGSEGVSKKTRIIQVAYHPSNNELVRTNTLTKSAIVQIDAAPFRVWYETHYGIL 120

Query: 313 LGRKKGAKLTEXEEXIITKKRSQKPARKYLARQRLVKVEGAXEEQFXXGRLLACVASRPG 134
           +G  KG K T          +S+   RK+ AR    KV+ A E QF  GRL A V+SRPG
Sbjct: 121 MG-SKGKKAT-----ATPTPKSKHVQRKHSARLGDSKVDSALETQFAAGRLYAVVSSRPG 174

Query: 133 QCGRADGYILEGKELEFYXRKIKSKR 56
           Q GR DGYILEG+EL FY R++  K+
Sbjct: 175 QSGRCDGYILEGEELHFYLRRMAPKK 200


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,355,033
Number of Sequences: 5004
Number of extensions: 40632
Number of successful extensions: 79
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)