Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31991
         (700 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0510 - 16659486-16659564,16659772-16659947,16660464-166607...   250   8e-67
02_03_0270 + 17135464-17135467,17135583-17135655,17136253-171365...   235   2e-62
04_03_0867 - 20414999-20415160,20415255-20415384,20415515-204157...    29   3.5  
07_03_0361 + 17215312-17216217                                         28   6.2  

>04_03_0510 -
           16659486-16659564,16659772-16659947,16660464-16660797,
           16661564-16661636,16661780-16661783
          Length = 221

 Score =  250 bits (612), Expect = 8e-67
 Identities = 129/217 (59%), Positives = 152/217 (70%), Gaps = 9/217 (4%)
 Frame = -1

Query: 673 MGISRDHWHKRRPXGGKRAPIRKKRKYELGRPAANTRLGP-QXIHSVRSRGXNNKXRALR 497
           MGISRD  HKRR  GGK+   RKKRKYELGR  ANT+L   + +  VR RG N K RALR
Sbjct: 1   MGISRDSMHKRRATGGKQKAWRKKRKYELGRQPANTKLSSNKTVRRVRVRGGNLKWRALR 60

Query: 496 LDXGNFSWGSECSTRKTRIIDVVYNASXNELVRTKXLVKNAIVVVDATPFRQWYESHYTL 317
           LD GN+SWGSE  TRKTRI+DVVYNAS NELVRT+ LVK+AIV VDA PF+QWY +HY +
Sbjct: 61  LDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLTHYGV 120

Query: 316 PLGRKK--------GAKLTEXEEXIITKKRSQKPARKYLARQRLVKVEGAXEEQFXXGRL 161
            +GRKK         A+  E E      K+S    RK   RQ+   ++   EEQF  GRL
Sbjct: 121 DIGRKKKAPAAKKDAAEGQEGEAATEEAKKSNHVVRKLEKRQQTRTLDSHIEEQFGSGRL 180

Query: 160 LACVASRPGQCGRADGYILEGKELEFYXRKIKSKRAK 50
           LAC++SRPGQCGRADGYILEGKELEFY +K++ K+ K
Sbjct: 181 LACISSRPGQCGRADGYILEGKELEFYMKKLQRKKGK 217


>02_03_0270 +
           17135464-17135467,17135583-17135655,17136253-17136583,
           17136916-17136969,17137219-17137394,17137607-17137685
          Length = 238

 Score =  235 bits (575), Expect = 2e-62
 Identities = 129/234 (55%), Positives = 154/234 (65%), Gaps = 26/234 (11%)
 Frame = -1

Query: 673 MGISRDHWHKRRPXGGKRAPIRKKRKYELGRPAANTRLGP-QXIHSVRSRGXNNKXRALR 497
           MGISRD  HKRR  GGK+   RKKRKYELGR  ANT+L   + +  VR RG N K RALR
Sbjct: 1   MGISRDSMHKRRATGGKQKAWRKKRKYELGRQPANTKLSSNKTVRRVRVRGGNVKWRALR 60

Query: 496 LDXGNFSWGSECSTRKTRIIDVVYNASXNELVRTKXLVKNAIVVVDATPFRQWYESHYTL 317
           LD GN+SWGSE  TRKTRI+DVVYNAS NELVRT+ LVK+AIV VDA PF+QWY +HY +
Sbjct: 61  LDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLTHYGV 120

Query: 316 PLGRKKGAKLTEXE-EXIITK------------------------KRSQKPARKYLARQR 212
            +GRKK A   + + E  + K                        K+S    RK   RQ+
Sbjct: 121 DIGRKKKAPAAKKDAEHALGKIRCLFIGLYVMLKGQDAEATTEEAKKSNHVVRKLEKRQQ 180

Query: 211 LVKVEGAXEEQFXXGRLLACVASRPGQCGRADGYILEGKELEFYXRKIKSKRAK 50
              ++   EEQF  GRLLAC++SRPGQCGRADGYILEGKELEFY +K++ K+ K
Sbjct: 181 GRTLDAHIEEQFGSGRLLACISSRPGQCGRADGYILEGKELEFYMKKLQRKKGK 234


>04_03_0867 -
           20414999-20415160,20415255-20415384,20415515-20415702,
           20415967-20416001,20416363-20416579,20416737-20416820,
           20417609-20417875,20417954-20418061,20418163-20418249,
           20418629-20419399
          Length = 682

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 14/53 (26%), Positives = 27/53 (50%)
 Frame = -2

Query: 564 GSVLXVSTPFVHVVXIISXVRCVWTPVTSLGDRNVQLAKPVSLMLCIMHLXMN 406
           G  +    P + VV   + + C+W  + SLG R  Q++K   + L ++ + +N
Sbjct: 270 GHQMVTINPLLSVVAA-TVIPCMWLVIASLGRRLRQISKEAHISLAMLTVYLN 321


>07_03_0361 + 17215312-17216217
          Length = 301

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 14/44 (31%), Positives = 20/44 (45%)
 Frame = -1

Query: 223 ARQRLVKVEGAXEEQFXXGRLLACVASRPGQCGRADGYILEGKE 92
           A++RLV VE A        R+  C+      CG  D  ++ G E
Sbjct: 90  AKERLVVVEFAASHSVNSSRIYPCMVELSRTCGDVDFLLVMGDE 133


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,055,471
Number of Sequences: 37544
Number of extensions: 295385
Number of successful extensions: 739
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 719
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 736
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)