Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31991
         (700 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39807| Best HMM Match : Ribosomal_S8e (HMM E-Value=0)              264   5e-71
SB_22712| Best HMM Match : Ribosomal_S8e (HMM E-Value=0.068)           46   2e-05
SB_17079| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.6  
SB_8638| Best HMM Match : PP2C (HMM E-Value=6.5e-32)                   30   2.1  

>SB_39807| Best HMM Match : Ribosomal_S8e (HMM E-Value=0)
          Length = 192

 Score =  264 bits (647), Expect = 5e-71
 Identities = 125/189 (66%), Positives = 145/189 (76%)
 Frame = -1

Query: 616 PIRKKRKYELGRPAANTRLGPQXIHSVRSRGXNNKXRALRLDXGNFSWGSECSTRKTRII 437
           P+R KRK+ELGRP ANT++G + IH VR+RG N K RA RLD  NFSWGSE  TRK RII
Sbjct: 4   PLRHKRKFELGRPPANTKIGTKRIHEVRTRGGNRKFRAFRLDTENFSWGSESCTRKARII 63

Query: 436 DVVYNASXNELVRTKXLVKNAIVVVDATPFRQWYESHYTLPLGRKKGAKLTEXEEXIITK 257
           DVVYNAS NELVRTK LVKN IV VD+TPFRQWYE+HY +P+GRKK  + TE E+ I+ K
Sbjct: 64  DVVYNASNNELVRTKTLVKNCIVQVDSTPFRQWYEAHYAIPIGRKKTKQPTEEEQEILNK 123

Query: 256 KRSQKPARKYLARQRLVKVEGAXEEQFXXGRLLACVASRPGQCGRADGYILEGKELEFYX 77
           KRS    RK  AR+   KV    EEQF  GRL ACV+SRPGQ GR DGYILEGKELEFY 
Sbjct: 124 KRSNHCTRKLEARKANAKVAPGMEEQFVTGRLYACVSSRPGQSGRCDGYILEGKELEFYI 183

Query: 76  RKIKSKRAK 50
           +K+K+++AK
Sbjct: 184 KKLKARKAK 192


>SB_22712| Best HMM Match : Ribosomal_S8e (HMM E-Value=0.068)
          Length = 147

 Score = 46.4 bits (105), Expect = 2e-05
 Identities = 21/77 (27%), Positives = 43/77 (55%)
 Frame = -1

Query: 556 PQXIHSVRSRGXNNKXRALRLDXGNFSWGSECSTRKTRIIDVVYNASXNELVRTKXLVKN 377
           P+ I   ++ G + K +ALR++ G ++  S+    +  I+ V+++ +  E +    +VK 
Sbjct: 37  PEKIKERKAYGGHTKIKALRVNKGVYTLKSQGVEVEAPILSVMHSFANKEHIERNVIVKG 96

Query: 376 AIVVVDATPFRQWYESH 326
           +IV VD  PF  W++ +
Sbjct: 97  SIVQVDNKPFEDWFQEY 113


>SB_17079| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2537

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -1

Query: 640 RPXGGKRAPIRKKRKYELGRPAANTRLGP 554
           R  GG R P+++   +E  +P+ N R GP
Sbjct: 769 RRGGGSRVPVKRSSSFENRKPSPNRRRGP 797


>SB_8638| Best HMM Match : PP2C (HMM E-Value=6.5e-32)
          Length = 905

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 16/58 (27%), Positives = 26/58 (44%)
 Frame = -1

Query: 268 IITKKRSQKPARKYLARQRLVKVEGAXEEQFXXGRLLACVASRPGQCGRADGYILEGK 95
           +   ++S+K   K +   +L  +EG  E     G LL    S    C R  GY ++G+
Sbjct: 129 LTASEKSEKYTEKKIRSDKLTWIEGNEEGASHIGDLLLKYDSLVSSCSRRIGYDIQGR 186


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,300,203
Number of Sequences: 59808
Number of extensions: 335749
Number of successful extensions: 743
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 687
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 743
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)