Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV31991
(700 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X67247-1|CAA47670.1| 208|Homo sapiens ribosomal protein S8 prot... 336 6e-92
BC070875-1|AAH70875.1| 208|Homo sapiens ribosomal protein S8 pr... 336 6e-92
AL592166-7|CAI13003.1| 208|Homo sapiens ribosomal protein S8 pr... 336 6e-92
AB062401-1|BAB93488.1| 208|Homo sapiens ribosomal protein S8 pr... 336 6e-92
AL592166-8|CAI13002.1| 188|Homo sapiens ribosomal protein S8 pr... 279 9e-75
BC005678-1|AAH05678.1| 80|Homo sapiens Similar to ribosomal pr... 111 3e-24
>X67247-1|CAA47670.1| 208|Homo sapiens ribosomal protein S8
protein.
Length = 208
Score = 336 bits (825), Expect = 6e-92
Identities = 153/208 (73%), Positives = 174/208 (83%)
Frame = -1
Query: 673 MGISRDHWHKRRPXGGKRAPIRKKRKYELGRPAANTRLGPQXIHSVRSRGXNNKXRALRL 494
MGISRD+WHKRR GGKR P KKRKYELGRPAANT++GP+ IH+VR RG N K RALRL
Sbjct: 1 MGISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRL 60
Query: 493 DXGNFSWGSECSTRKTRIIDVVYNASXNELVRTKXLVKNAIVVVDATPFRQWYESHYTLP 314
D GNFSWGSEC TRKTRIIDVVYNAS NELVRTK LVKN IV++D+TP+RQWYESHY LP
Sbjct: 61 DVGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALP 120
Query: 313 LGRKKGAKLTEXEEXIITKKRSQKPARKYLARQRLVKVEGAXEEQFXXGRLLACVASRPG 134
LGRKKGAKLT EE I+ KKRS+K +KY R++ K+ EEQF G+LLAC+ASRPG
Sbjct: 121 LGRKKGAKLTPEEEEILNKKRSKKIQKKYDERKKNAKISSLLEEQFQQGKLLACIASRPG 180
Query: 133 QCGRADGYILEGKELEFYXRKIKSKRAK 50
QCGRADGY+LEGKELEFY RKIK+++ K
Sbjct: 181 QCGRADGYVLEGKELEFYLRKIKARKGK 208
>BC070875-1|AAH70875.1| 208|Homo sapiens ribosomal protein S8
protein.
Length = 208
Score = 336 bits (825), Expect = 6e-92
Identities = 153/208 (73%), Positives = 174/208 (83%)
Frame = -1
Query: 673 MGISRDHWHKRRPXGGKRAPIRKKRKYELGRPAANTRLGPQXIHSVRSRGXNNKXRALRL 494
MGISRD+WHKRR GGKR P KKRKYELGRPAANT++GP+ IH+VR RG N K RALRL
Sbjct: 1 MGISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRL 60
Query: 493 DXGNFSWGSECSTRKTRIIDVVYNASXNELVRTKXLVKNAIVVVDATPFRQWYESHYTLP 314
D GNFSWGSEC TRKTRIIDVVYNAS NELVRTK LVKN IV++D+TP+RQWYESHY LP
Sbjct: 61 DVGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALP 120
Query: 313 LGRKKGAKLTEXEEXIITKKRSQKPARKYLARQRLVKVEGAXEEQFXXGRLLACVASRPG 134
LGRKKGAKLT EE I+ KKRS+K +KY R++ K+ EEQF G+LLAC+ASRPG
Sbjct: 121 LGRKKGAKLTPEEEEILNKKRSKKIQKKYDERKKNAKISSLLEEQFQQGKLLACIASRPG 180
Query: 133 QCGRADGYILEGKELEFYXRKIKSKRAK 50
QCGRADGY+LEGKELEFY RKIK+++ K
Sbjct: 181 QCGRADGYVLEGKELEFYLRKIKARKGK 208
>AL592166-7|CAI13003.1| 208|Homo sapiens ribosomal protein S8
protein.
Length = 208
Score = 336 bits (825), Expect = 6e-92
Identities = 153/208 (73%), Positives = 174/208 (83%)
Frame = -1
Query: 673 MGISRDHWHKRRPXGGKRAPIRKKRKYELGRPAANTRLGPQXIHSVRSRGXNNKXRALRL 494
MGISRD+WHKRR GGKR P KKRKYELGRPAANT++GP+ IH+VR RG N K RALRL
Sbjct: 1 MGISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRL 60
Query: 493 DXGNFSWGSECSTRKTRIIDVVYNASXNELVRTKXLVKNAIVVVDATPFRQWYESHYTLP 314
D GNFSWGSEC TRKTRIIDVVYNAS NELVRTK LVKN IV++D+TP+RQWYESHY LP
Sbjct: 61 DVGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALP 120
Query: 313 LGRKKGAKLTEXEEXIITKKRSQKPARKYLARQRLVKVEGAXEEQFXXGRLLACVASRPG 134
LGRKKGAKLT EE I+ KKRS+K +KY R++ K+ EEQF G+LLAC+ASRPG
Sbjct: 121 LGRKKGAKLTPEEEEILNKKRSKKIQKKYDERKKNAKISSLLEEQFQQGKLLACIASRPG 180
Query: 133 QCGRADGYILEGKELEFYXRKIKSKRAK 50
QCGRADGY+LEGKELEFY RKIK+++ K
Sbjct: 181 QCGRADGYVLEGKELEFYLRKIKARKGK 208
>AB062401-1|BAB93488.1| 208|Homo sapiens ribosomal protein S8
protein.
Length = 208
Score = 336 bits (825), Expect = 6e-92
Identities = 153/208 (73%), Positives = 174/208 (83%)
Frame = -1
Query: 673 MGISRDHWHKRRPXGGKRAPIRKKRKYELGRPAANTRLGPQXIHSVRSRGXNNKXRALRL 494
MGISRD+WHKRR GGKR P KKRKYELGRPAANT++GP+ IH+VR RG N K RALRL
Sbjct: 1 MGISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRL 60
Query: 493 DXGNFSWGSECSTRKTRIIDVVYNASXNELVRTKXLVKNAIVVVDATPFRQWYESHYTLP 314
D GNFSWGSEC TRKTRIIDVVYNAS NELVRTK LVKN IV++D+TP+RQWYESHY LP
Sbjct: 61 DVGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALP 120
Query: 313 LGRKKGAKLTEXEEXIITKKRSQKPARKYLARQRLVKVEGAXEEQFXXGRLLACVASRPG 134
LGRKKGAKLT EE I+ KKRS+K +KY R++ K+ EEQF G+LLAC+ASRPG
Sbjct: 121 LGRKKGAKLTPEEEEILNKKRSKKIQKKYDERKKNAKISSLLEEQFQQGKLLACIASRPG 180
Query: 133 QCGRADGYILEGKELEFYXRKIKSKRAK 50
QCGRADGY+LEGKELEFY RKIK+++ K
Sbjct: 181 QCGRADGYVLEGKELEFYLRKIKARKGK 208
>AL592166-8|CAI13002.1| 188|Homo sapiens ribosomal protein S8
protein.
Length = 188
Score = 279 bits (683), Expect = 9e-75
Identities = 137/208 (65%), Positives = 158/208 (75%)
Frame = -1
Query: 673 MGISRDHWHKRRPXGGKRAPIRKKRKYELGRPAANTRLGPQXIHSVRSRGXNNKXRALRL 494
MGISRD+WHKRR GGKR P KKRKYELGRPAANT++GP+ IH+VR RG
Sbjct: 1 MGISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGG--------- 51
Query: 493 DXGNFSWGSECSTRKTRIIDVVYNASXNELVRTKXLVKNAIVVVDATPFRQWYESHYTLP 314
C TRKTRIIDVVYNAS NELVRTK LVKN IV++D+TP+RQWYESHY LP
Sbjct: 52 ----------C-TRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALP 100
Query: 313 LGRKKGAKLTEXEEXIITKKRSQKPARKYLARQRLVKVEGAXEEQFXXGRLLACVASRPG 134
LGRKKGAKLT EE I+ KKRS+K +KY R++ K+ EEQF G+LLAC+ASRPG
Sbjct: 101 LGRKKGAKLTPEEEEILNKKRSKKIQKKYDERKKNAKISSLLEEQFQQGKLLACIASRPG 160
Query: 133 QCGRADGYILEGKELEFYXRKIKSKRAK 50
QCGRADGY+LEGKELEFY RKIK+++ K
Sbjct: 161 QCGRADGYVLEGKELEFYLRKIKARKGK 188
>BC005678-1|AAH05678.1| 80|Homo sapiens Similar to ribosomal
protein S8 protein.
Length = 80
Score = 111 bits (266), Expect = 3e-24
Identities = 50/80 (62%), Positives = 62/80 (77%)
Frame = -1
Query: 289 LTEXEEXIITKKRSQKPARKYLARQRLVKVEGAXEEQFXXGRLLACVASRPGQCGRADGY 110
LT EE I+ KKRS+K +KY R++ K+ EEQF G+LLAC+ASRPGQCGRADGY
Sbjct: 1 LTPEEEEILNKKRSKKIQKKYDERKKNAKISSLLEEQFQQGKLLACIASRPGQCGRADGY 60
Query: 109 ILEGKELEFYXRKIKSKRAK 50
+LEGKELEFY RKIK+++ K
Sbjct: 61 VLEGKELEFYLRKIKARKGK 80
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 88,969,564
Number of Sequences: 237096
Number of extensions: 1774379
Number of successful extensions: 3083
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2960
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3083
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8063224416
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -