Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV31991
(700 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40799-7|AAA81485.1| 208|Caenorhabditis elegans Ribosomal prote... 274 3e-74
U66260-1|AAB07021.1| 1540|Caenorhabditis elegans multidrug resis... 32 0.45
U41554-8|ABA03118.1| 1534|Caenorhabditis elegans Multidrug resis... 32 0.45
U41554-7|AAM69107.1| 1534|Caenorhabditis elegans Multidrug resis... 32 0.45
U41554-6|AAL06032.1| 1534|Caenorhabditis elegans Multidrug resis... 32 0.45
U41554-5|AAD31550.2| 1528|Caenorhabditis elegans Multidrug resis... 32 0.45
AB199793-1|BAD88409.1| 1534|Caenorhabditis elegans multidrug res... 32 0.45
AY551964-1|AAS65428.1| 795|Caenorhabditis elegans enhancer of p... 27 9.8
AL132904-22|CAC35840.2| 795|Caenorhabditis elegans Hypothetical... 27 9.8
>U40799-7|AAA81485.1| 208|Caenorhabditis elegans Ribosomal protein,
small subunitprotein 8 protein.
Length = 208
Score = 274 bits (673), Expect = 3e-74
Identities = 129/208 (62%), Positives = 155/208 (74%)
Frame = -1
Query: 673 MGISRDHWHKRRPXGGKRAPIRKKRKYELGRPAANTRLGPQXIHSVRSRGXNNKXRALRL 494
MGISRD WHKR G + KKRK+ELGRPAANT++G + VR+RG N K RALRL
Sbjct: 1 MGISRDSWHKRYKTGATQPVPHKKRKFELGRPAANTKIGAHRVRLVRTRGGNEKYRALRL 60
Query: 493 DXGNFSWGSECSTRKTRIIDVVYNASXNELVRTKXLVKNAIVVVDATPFRQWYESHYTLP 314
D GNFSW SE +TRKTRI+D +YNA+ NELVRTK LVK AI+ VDA PFRQWYE+HY LP
Sbjct: 61 DSGNFSWASEQTTRKTRIVDTMYNATNNELVRTKTLVKGAIISVDAAPFRQWYEAHYALP 120
Query: 313 LGRKKGAKLTEXEEXIITKKRSQKPARKYLARQRLVKVEGAXEEQFXXGRLLACVASRPG 134
L RKK AKL+E + I+ KKRS +KY RQ+ V+ EQF GRLLA ++S PG
Sbjct: 121 LARKKNAKLSEEDNAILNKKRSHHTMKKYTERQKTAAVDALLIEQFNTGRLLARISSSPG 180
Query: 133 QCGRADGYILEGKELEFYXRKIKSKRAK 50
Q G+A+GYILEGKEL+FY RKI++K+AK
Sbjct: 181 QVGQANGYILEGKELDFYLRKIRAKKAK 208
>U66260-1|AAB07021.1| 1540|Caenorhabditis elegans multidrug
resistance related protein1 protein.
Length = 1540
Score = 31.9 bits (69), Expect = 0.45
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
Frame = -1
Query: 577 AANTRL----GPQXIHSVRSRGXNNKXRALRLDXGNFSWGSECSTRKTRIIDVVYNASXN 410
A+NTRL + + S A+++D G+F+WGS+ RK + D+ +N
Sbjct: 585 ASNTRLKEFFAAEEMSPQTSIAYGGTDSAIKMDGGSFAWGSKEEDRK--LHDITFNIKRG 642
Query: 409 ELV 401
+LV
Sbjct: 643 QLV 645
>U41554-8|ABA03118.1| 1534|Caenorhabditis elegans Multidrug
resistance protein familyprotein 1, isoform e protein.
Length = 1534
Score = 31.9 bits (69), Expect = 0.45
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
Frame = -1
Query: 577 AANTRL----GPQXIHSVRSRGXNNKXRALRLDXGNFSWGSECSTRKTRIIDVVYNASXN 410
A+NTRL + + S A+++D G+F+WGS+ RK + D+ +N
Sbjct: 585 ASNTRLKEFFAAEEMSPQTSIAYGGTDSAIKMDGGSFAWGSKEEDRK--LHDITFNIKRG 642
Query: 409 ELV 401
+LV
Sbjct: 643 QLV 645
>U41554-7|AAM69107.1| 1534|Caenorhabditis elegans Multidrug
resistance protein familyprotein 1, isoform c protein.
Length = 1534
Score = 31.9 bits (69), Expect = 0.45
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
Frame = -1
Query: 577 AANTRL----GPQXIHSVRSRGXNNKXRALRLDXGNFSWGSECSTRKTRIIDVVYNASXN 410
A+NTRL + + S A+++D G+F+WGS+ RK + D+ +N
Sbjct: 585 ASNTRLKEFFAAEEMSPQTSIAYGGTDSAIKMDGGSFAWGSKEEDRK--LHDITFNIKRG 642
Query: 409 ELV 401
+LV
Sbjct: 643 QLV 645
>U41554-6|AAL06032.1| 1534|Caenorhabditis elegans Multidrug
resistance protein familyprotein 1, isoform b protein.
Length = 1534
Score = 31.9 bits (69), Expect = 0.45
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
Frame = -1
Query: 577 AANTRL----GPQXIHSVRSRGXNNKXRALRLDXGNFSWGSECSTRKTRIIDVVYNASXN 410
A+NTRL + + S A+++D G+F+WGS+ RK + D+ +N
Sbjct: 585 ASNTRLKEFFAAEEMSPQTSIAYGGTDSAIKMDGGSFAWGSKEEDRK--LHDITFNIKRG 642
Query: 409 ELV 401
+LV
Sbjct: 643 QLV 645
>U41554-5|AAD31550.2| 1528|Caenorhabditis elegans Multidrug
resistance protein familyprotein 1, isoform a protein.
Length = 1528
Score = 31.9 bits (69), Expect = 0.45
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
Frame = -1
Query: 577 AANTRL----GPQXIHSVRSRGXNNKXRALRLDXGNFSWGSECSTRKTRIIDVVYNASXN 410
A+NTRL + + S A+++D G+F+WGS+ RK + D+ +N
Sbjct: 585 ASNTRLKEFFAAEEMSPQTSIAYGGTDSAIKMDGGSFAWGSKEEDRK--LHDITFNIKRG 642
Query: 409 ELV 401
+LV
Sbjct: 643 QLV 645
>AB199793-1|BAD88409.1| 1534|Caenorhabditis elegans multidrug
resistance-associatedprotein protein.
Length = 1534
Score = 31.9 bits (69), Expect = 0.45
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
Frame = -1
Query: 577 AANTRL----GPQXIHSVRSRGXNNKXRALRLDXGNFSWGSECSTRKTRIIDVVYNASXN 410
A+NTRL + + S A+++D G+F+WGS+ RK + D+ +N
Sbjct: 585 ASNTRLKEFFAAEEMSPQTSIAYGGTDSAIKMDGGSFAWGSKEEDRK--LHDITFNIKRG 642
Query: 409 ELV 401
+LV
Sbjct: 643 QLV 645
>AY551964-1|AAS65428.1| 795|Caenorhabditis elegans enhancer of
polycomb protein.
Length = 795
Score = 27.5 bits (58), Expect = 9.8
Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Frame = +1
Query: 463 IPIPKRSYRXPDAAHGTYYXHHVNERSGYXEDRAW-CLQRD 582
IP PK H TY+ + RS Y + AW L+RD
Sbjct: 77 IPTPKVDRVEDQRYHSTYHNKNKMHRSKYIKVHAWQALERD 117
>AL132904-22|CAC35840.2| 795|Caenorhabditis elegans Hypothetical
protein Y111B2A.11 protein.
Length = 795
Score = 27.5 bits (58), Expect = 9.8
Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Frame = +1
Query: 463 IPIPKRSYRXPDAAHGTYYXHHVNERSGYXEDRAW-CLQRD 582
IP PK H TY+ + RS Y + AW L+RD
Sbjct: 77 IPTPKVDRVEDQRYHSTYHNKNKMHRSKYIKVHAWQALERD 117
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,310,973
Number of Sequences: 27780
Number of extensions: 241793
Number of successful extensions: 582
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 565
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 582
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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