Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31987
         (389 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC777.09c |arg1||acetylornithine aminotransferase|Schizosaccha...    56   3e-09
SPBC21C3.08c |||ornithine aminotransferase|Schizosaccharomyces p...    45   4e-06
SPAC1039.07c |||4-aminobutyrate aminotransferase |Schizosaccharo...    32   0.027
SPCC417.11c |||glutamate-1-semialdehyde 2,1-aminomutaseaminotran...    31   0.083
SPBC1773.03c |||aminotransferase class-III, unknown specificty|S...    30   0.11 
SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomy...    27   0.77 
SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28 |Schizo...    27   1.4  
SPAC4G9.07 |mug133||S. pombe specific UPF0300 family protein 2|S...    26   1.8  
SPAC27F1.05c |||aminotransferase class-III, unknown specificty|S...    26   2.4  
SPBC4B4.04 |||translation initiation factor eIF2A |Schizosacchar...    25   3.1  
SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyce...    25   4.1  
SPAC3A12.03c |mug145||ubiquitin-protein ligase E3 |Schizosacchar...    25   5.5  
SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomy...    25   5.5  
SPBC29B5.01 |atf1|mts1, sss1, gad7|transcription factor Atf1|Sch...    24   7.2  
SPAC2E1P3.02c |amt3||ammonium transporter Amt3|Schizosaccharomyc...    24   7.2  
SPAC2F3.08 |sut1||alpha-glucoside transporter |Schizosaccharomyc...    24   7.2  

>SPCC777.09c |arg1||acetylornithine
           aminotransferase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 441

 Score = 55.6 bits (128), Expect = 3e-09
 Identities = 23/65 (35%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
 Frame = +2

Query: 197 SITNAYKK-PVLLTQGHMQWLYDNDGKRYLDLFGGIVTVSVGHCHPKVNAALKDQLDVLW 373
           +I + Y + PV+  +G   +L+D +G++Y+D   G+   S+GH HP+V     DQ   L 
Sbjct: 46  NIISVYARYPVVAAKGEGSYLFDKEGRKYIDFTSGVAVTSLGHAHPEVARLAADQCSKLV 105

Query: 374 HTTNL 388
           H++NL
Sbjct: 106 HSSNL 110


>SPBC21C3.08c |||ornithine aminotransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 438

 Score = 45.2 bits (102), Expect = 4e-06
 Identities = 22/69 (31%), Positives = 37/69 (53%)
 Frame = +2

Query: 152 SYQQVEQMKGVYMPPSITNAYKKPVLLTQGHMQWLYDNDGKRYLDLFGGIVTVSVGHCHP 331
           S +Q+E ++  Y   +  N +  PV  ++     ++D +G+ YLD       V+ GHCHP
Sbjct: 12  STEQIEVLENEY---AAHNYHPLPVCFSKAKGAKVWDPEGREYLDFLSAYSAVNQGHCHP 68

Query: 332 KVNAALKDQ 358
           K+  AL +Q
Sbjct: 69  KIIEALVEQ 77


>SPAC1039.07c |||4-aminobutyrate aminotransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 448

 Score = 32.3 bits (70), Expect = 0.027
 Identities = 14/52 (26%), Positives = 24/52 (46%)
 Frame = +2

Query: 221 PVLLTQGHMQWLYDNDGKRYLDLFGGIVTVSVGHCHPKVNAALKDQLDVLWH 376
           P ++ +     +YD      LD   G ++  +GH HP + A ++  L  L H
Sbjct: 33  PKIIVRAKGCCVYDEQDNAILDFTSGQMSAILGHSHPDITACIEKNLPKLVH 84


>SPCC417.11c |||glutamate-1-semialdehyde
           2,1-aminomutaseaminotransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 435

 Score = 30.7 bits (66), Expect = 0.083
 Identities = 14/48 (29%), Positives = 20/48 (41%)
 Frame = +2

Query: 221 PVLLTQGHMQWLYDNDGKRYLDLFGGIVTVSVGHCHPKVNAALKDQLD 364
           P+ +  G+   L D DG  Y D    +     GH +P +  AL    D
Sbjct: 52  PIFIEAGYGSKLRDVDGHEYTDFLNELTAGIYGHSNPVIKKALMQGFD 99


>SPBC1773.03c |||aminotransferase class-III, unknown
           specificty|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 459

 Score = 30.3 bits (65), Expect = 0.11
 Identities = 15/52 (28%), Positives = 25/52 (48%)
 Frame = +2

Query: 203 TNAYKKPVLLTQGHMQWLYDNDGKRYLDLFGGIVTVSVGHCHPKVNAALKDQ 358
           T+   +P  + +    +LY  DG R +D  GG     +GH + +V  A+  Q
Sbjct: 22  TSPNHRPPTVVRAEGVYLYLEDGTRIMDATGGAAVACLGHGNKEVIDAMHKQ 73


>SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 421

 Score = 27.5 bits (58), Expect = 0.77
 Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
 Frame = +2

Query: 47  EMANRGT--KLCFDIVRTYSTAKMPPTDF 127
           E+ANR    KLC+ I++    A +PPT+F
Sbjct: 355 EIANRPRDFKLCYWILKEIGVATIPPTEF 383


>SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1055

 Score = 26.6 bits (56), Expect = 1.4
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = +2

Query: 143  TGPSYQQVEQMKGVYMPPSITNAYKKPVLL 232
            +G SY+ V+  + VY+ PS + A KKP ++
Sbjct: 977  SGDSYRTVKSNQTVYIHPSSSVAEKKPKVI 1006


>SPAC4G9.07 |mug133||S. pombe specific UPF0300 family protein
           2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 26.2 bits (55), Expect = 1.8
 Identities = 9/34 (26%), Positives = 16/34 (47%)
 Frame = -3

Query: 339 FTFG*QWPTETVTIPPNRSRYLLPSLSYNHCMCP 238
           +T+  +W  E  + P     Y++    YN  +CP
Sbjct: 108 YTYNSRWKIEIPSYPVREIPYVVADTPYNKLLCP 141


>SPAC27F1.05c |||aminotransferase class-III, unknown
           specificty|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 484

 Score = 25.8 bits (54), Expect = 2.4
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +2

Query: 260 DNDGKRYLDLFGGIVTVSVGH 322
           D  G  +LDL GG+  V+VG+
Sbjct: 85  DEKGTEHLDLIGGVGVVTVGN 105


>SPBC4B4.04 |||translation initiation factor eIF2A
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 576

 Score = 25.4 bits (53), Expect = 3.1
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +3

Query: 210 PIRSRCFSPRGTCSGYTTTT 269
           P R+ C+SP G    Y T T
Sbjct: 36  PARNACYSPNGKLFAYATAT 55


>SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 522

 Score = 25.0 bits (52), Expect = 4.1
 Identities = 12/34 (35%), Positives = 15/34 (44%)
 Frame = +2

Query: 122 DFVPRPYTGPSYQQVEQMKGVYMPPSITNAYKKP 223
           D  P P   PS Q    +    MPP +T  Y +P
Sbjct: 454 DGSPDPPAAPSIQNSLSVHESEMPPHVTRDYTQP 487


>SPAC3A12.03c |mug145||ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 309

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -2

Query: 343 CIYFRMTMAHGDGDDSTEQIQ 281
           C+YF  T+ + +GDD    IQ
Sbjct: 48  CVYFYHTLENQEGDDERPLIQ 68


>SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 800

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = -1

Query: 167 LLVGTKVPCTVWARNPSAAFWPC 99
           + VGT     +WA  P ++ W C
Sbjct: 511 ITVGTDATLRIWALLPGSSAWKC 533


>SPBC29B5.01 |atf1|mts1, sss1, gad7|transcription factor
           Atf1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 566

 Score = 24.2 bits (50), Expect = 7.2
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = +3

Query: 3   SSVTYCNRLNRRNTSKWLIEEQNYASTSSERTARPKCRRR 122
           +  +Y    +RRN+     EE+  +     R A  KCR+R
Sbjct: 453 NGTSYSKGSSRRNSKNETDEEKRKSFLERNRQAALKCRQR 492


>SPAC2E1P3.02c |amt3||ammonium transporter Amt3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 517

 Score = 24.2 bits (50), Expect = 7.2
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = -3

Query: 273 LPSLSYNHCMCPWVRSTGF 217
           LPS S N+C   W R  GF
Sbjct: 230 LPSSSQNNCKANWKRWFGF 248


>SPAC2F3.08 |sut1||alpha-glucoside transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 553

 Score = 24.2 bits (50), Expect = 7.2
 Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
 Frame = -3

Query: 303 TIPPNRSRYLLP-SLSYNHCMCPWVRSTGFL*AFVIEGGM*TPFICSTCWYEGPVYGLGT 127
           +IP   S YL+  ++S       W    G+   ++   G+   +  S  W  GP+ G+  
Sbjct: 27  SIPSRSSLYLIALTVSLLGVQLTWSVELGYGTPYLFSLGLRKEWT-SIIWIAGPLTGILI 85

Query: 126 KSVGGILA 103
           + + GIL+
Sbjct: 86  QPIAGILS 93


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,813,309
Number of Sequences: 5004
Number of extensions: 37449
Number of successful extensions: 112
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 128029482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)