Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV31987
(389 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U97405-5|AAB53010.3| 444|Caenorhabditis elegans Hypothetical pr... 97 4e-21
U41534-14|AAV34796.1| 226|Caenorhabditis elegans Hypothetical p... 46 9e-06
U41534-13|AAD31050.2| 422|Caenorhabditis elegans Hypothetical p... 46 9e-06
U80931-3|AAO91701.1| 160|Caenorhabditis elegans Hypothetical pr... 44 3e-05
U80931-2|AAB37999.1| 467|Caenorhabditis elegans Hypothetical pr... 44 3e-05
U41534-12|AAM22027.1| 357|Caenorhabditis elegans Hypothetical p... 43 9e-05
Z75552-9|CAA99945.2| 705|Caenorhabditis elegans Hypothetical pr... 29 0.88
Z75551-6|CAA99937.2| 705|Caenorhabditis elegans Hypothetical pr... 29 0.88
U41552-9|AAC69098.2| 1061|Caenorhabditis elegans Hypothetical pr... 29 1.5
CU457741-1|CAM36342.1| 347|Caenorhabditis elegans Hypothetical ... 29 1.5
U39644-1|AAA80359.2| 393|Caenorhabditis elegans Hypothetical pr... 28 2.7
Z75539-1|CAA99843.1| 672|Caenorhabditis elegans Hypothetical pr... 26 8.2
Z50742-5|CAA90618.2| 650|Caenorhabditis elegans Hypothetical pr... 26 8.2
U41038-2|AAX88827.1| 635|Caenorhabditis elegans Serotonin/octop... 26 8.2
U41038-1|AAK29709.2| 683|Caenorhabditis elegans Serotonin/octop... 26 8.2
AF031415-1|AAC15778.1| 635|Caenorhabditis elegans serotonin rec... 26 8.2
AF031414-1|AAC15827.1| 683|Caenorhabditis elegans serotonin rec... 26 8.2
>U97405-5|AAB53010.3| 444|Caenorhabditis elegans Hypothetical
protein T09B4.8 protein.
Length = 444
Score = 97.1 bits (231), Expect = 4e-21
Identities = 41/77 (53%), Positives = 59/77 (76%)
Frame = +2
Query: 158 QQVEQMKGVYMPPSITNAYKKPVLLTQGHMQWLYDNDGKRYLDLFGGIVTVSVGHCHPKV 337
Q+V+ ++ + +P YK +L+T+G Q+L+D++GK+YLD FGGIVTVSVGHCHPK+
Sbjct: 2 QRVQALRPL-LPKGHVTYYKDQLLITKGEKQFLFDSNGKKYLDFFGGIVTVSVGHCHPKI 60
Query: 338 NAALKDQLDVLWHTTNL 388
NAAL +Q LWHTT++
Sbjct: 61 NAALTEQAQKLWHTTSI 77
>U41534-14|AAV34796.1| 226|Caenorhabditis elegans Hypothetical
protein C16A3.10c protein.
Length = 226
Score = 46.0 bits (104), Expect = 9e-06
Identities = 19/54 (35%), Positives = 32/54 (59%)
Frame = +2
Query: 221 PVLLTQGHMQWLYDNDGKRYLDLFGGIVTVSVGHCHPKVNAALKDQLDVLWHTT 382
PV L++G +++D +GK+Y D V+ GHCHPK+ +++Q L T+
Sbjct: 40 PVALSKGEGCFVWDVEGKKYFDFLAAYSAVNQGHCHPKLLKVVQEQASTLTLTS 93
>U41534-13|AAD31050.2| 422|Caenorhabditis elegans Hypothetical
protein C16A3.10a protein.
Length = 422
Score = 46.0 bits (104), Expect = 9e-06
Identities = 19/54 (35%), Positives = 32/54 (59%)
Frame = +2
Query: 221 PVLLTQGHMQWLYDNDGKRYLDLFGGIVTVSVGHCHPKVNAALKDQLDVLWHTT 382
PV L++G +++D +GK+Y D V+ GHCHPK+ +++Q L T+
Sbjct: 40 PVALSKGEGCFVWDVEGKKYFDFLAAYSAVNQGHCHPKLLKVVQEQASTLTLTS 93
>U80931-3|AAO91701.1| 160|Caenorhabditis elegans Hypothetical
protein T01B11.2b protein.
Length = 160
Score = 44.4 bits (100), Expect = 3e-05
Identities = 19/47 (40%), Positives = 28/47 (59%)
Frame = +2
Query: 221 PVLLTQGHMQWLYDNDGKRYLDLFGGIVTVSVGHCHPKVNAALKDQL 361
P ++++ MQ+LYD ++LD + VGHCHPKV A+ QL
Sbjct: 50 PFMVSRASMQYLYDEKSNKFLDCISNVQ--HVGHCHPKVVEAISKQL 94
>U80931-2|AAB37999.1| 467|Caenorhabditis elegans Hypothetical
protein T01B11.2a protein.
Length = 467
Score = 44.4 bits (100), Expect = 3e-05
Identities = 19/47 (40%), Positives = 28/47 (59%)
Frame = +2
Query: 221 PVLLTQGHMQWLYDNDGKRYLDLFGGIVTVSVGHCHPKVNAALKDQL 361
P ++++ MQ+LYD ++LD + VGHCHPKV A+ QL
Sbjct: 50 PFMVSRASMQYLYDEKSNKFLDCISNVQ--HVGHCHPKVVEAISKQL 94
>U41534-12|AAM22027.1| 357|Caenorhabditis elegans Hypothetical
protein C16A3.10b protein.
Length = 357
Score = 42.7 bits (96), Expect = 9e-05
Identities = 21/55 (38%), Positives = 31/55 (56%)
Frame = +2
Query: 221 PVLLTQGHMQWLYDNDGKRYLDLFGGIVTVSVGHCHPKVNAALKDQLDVLWHTTN 385
PV L++G +++D +GK+Y D V+ GHCHPK+ LKD V+ N
Sbjct: 40 PVALSKGEGCFVWDVEGKKYFDFLAAYSAVNQGHCHPKL---LKDNEAVVVFAEN 91
>Z75552-9|CAA99945.2| 705|Caenorhabditis elegans Hypothetical
protein W04D2.6a protein.
Length = 705
Score = 29.5 bits (63), Expect = 0.88
Identities = 18/65 (27%), Positives = 31/65 (47%)
Frame = +3
Query: 30 NRRNTSKWLIEEQNYASTSSERTARPKCRRRISCPDRTRDLRTNK*NK*KEFTCRLQSRT 209
NRR+ S+ E+ + S+ + R K RR + + ++ ++ R +SRT
Sbjct: 225 NRRSRSRTRSRERTSRRSRSKESPRSKRSRRSRSSSNSSSESDSSSSRSSSYSSRSRSRT 284
Query: 210 PIRSR 224
P RSR
Sbjct: 285 PQRSR 289
>Z75551-6|CAA99937.2| 705|Caenorhabditis elegans Hypothetical
protein W04D2.6a protein.
Length = 705
Score = 29.5 bits (63), Expect = 0.88
Identities = 18/65 (27%), Positives = 31/65 (47%)
Frame = +3
Query: 30 NRRNTSKWLIEEQNYASTSSERTARPKCRRRISCPDRTRDLRTNK*NK*KEFTCRLQSRT 209
NRR+ S+ E+ + S+ + R K RR + + ++ ++ R +SRT
Sbjct: 225 NRRSRSRTRSRERTSRRSRSKESPRSKRSRRSRSSSNSSSESDSSSSRSSSYSSRSRSRT 284
Query: 210 PIRSR 224
P RSR
Sbjct: 285 PQRSR 289
>U41552-9|AAC69098.2| 1061|Caenorhabditis elegans Hypothetical
protein K07E3.1 protein.
Length = 1061
Score = 28.7 bits (61), Expect = 1.5
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +2
Query: 107 KMPPTDFVPRPYTGPSYQQVEQMKGVYMPPSITNAYKKP 223
K+ P + P+ G YQQ++Q PP + NAY+ P
Sbjct: 204 KVHPMPYHPQMNKGNHYQQLQQYT---QPPPVYNAYQPP 239
>CU457741-1|CAM36342.1| 347|Caenorhabditis elegans Hypothetical
protein C42C1.1 protein.
Length = 347
Score = 28.7 bits (61), Expect = 1.5
Identities = 17/47 (36%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Frame = -3
Query: 159 WYEGPVYGLGTKSVGGILAV-LYVLTMSKHNFVPLLAISMCFSC*GD 22
W+ G + G+G + GG+LA L ++ S ++ V LL +S SC G+
Sbjct: 135 WWIGIIIGIGLYTAGGLLAYSLAIVATSFYHTVFLLVLS-ATSCLGN 180
>U39644-1|AAA80359.2| 393|Caenorhabditis elegans Hypothetical
protein T10E10.3 protein.
Length = 393
Score = 27.9 bits (59), Expect = 2.7
Identities = 16/43 (37%), Positives = 21/43 (48%)
Frame = -2
Query: 181 SFHLFYLLVRRSRVRSGHEIRRRHFGRAVRSDDVEA*FCSSIS 53
SFH L R+R R R R + RSDDV A S+++
Sbjct: 197 SFHTCLLYYLRNRFRHFFPARTRSARNSTRSDDVPAPLLSNVT 239
>Z75539-1|CAA99843.1| 672|Caenorhabditis elegans Hypothetical
protein F28C1.1 protein.
Length = 672
Score = 26.2 bits (55), Expect = 8.2
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = +3
Query: 36 RNTSKWLIEEQNYASTSSERTARPKCRRRISCPDRTRDLRTNK 164
R S+ ++ + ++S R R K RRR DR+RD R K
Sbjct: 462 RRRSRSRDRRRHRSRSTSRRRQRSKDRRRDRSRDRSRDERNEK 504
>Z50742-5|CAA90618.2| 650|Caenorhabditis elegans Hypothetical
protein K09A11.5 protein.
Length = 650
Score = 26.2 bits (55), Expect = 8.2
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = +1
Query: 319 PLSSESKCSPQRSTRCIVAYDQP 387
PL + CS ST C++AY P
Sbjct: 564 PLQNFGVCSNWASTHCMIAYQNP 586
>U41038-2|AAX88827.1| 635|Caenorhabditis elegans
Serotonin/octopamine receptor familyprotein 1, isoform b
protein.
Length = 635
Score = 26.2 bits (55), Expect = 8.2
Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = +3
Query: 12 TY-CNRLNRRNTSKWLIEEQNYASTSSERTARPKCRRRIS 128
TY C+R N+ T+ + ++ ++ SSER + R IS
Sbjct: 421 TYTCSRSNQERTTSVITRDETRSARSSERPEPSRARSEIS 460
>U41038-1|AAK29709.2| 683|Caenorhabditis elegans
Serotonin/octopamine receptor familyprotein 1, isoform a
protein.
Length = 683
Score = 26.2 bits (55), Expect = 8.2
Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = +3
Query: 12 TY-CNRLNRRNTSKWLIEEQNYASTSSERTARPKCRRRIS 128
TY C+R N+ T+ + ++ ++ SSER + R IS
Sbjct: 469 TYTCSRSNQERTTSVITRDETRSARSSERPEPSRARSEIS 508
>AF031415-1|AAC15778.1| 635|Caenorhabditis elegans serotonin
receptor protein.
Length = 635
Score = 26.2 bits (55), Expect = 8.2
Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = +3
Query: 12 TY-CNRLNRRNTSKWLIEEQNYASTSSERTARPKCRRRIS 128
TY C+R N+ T+ + ++ ++ SSER + R IS
Sbjct: 421 TYTCSRSNQERTTSVITRDETRSARSSERPEPSRARSEIS 460
>AF031414-1|AAC15827.1| 683|Caenorhabditis elegans serotonin
receptor protein.
Length = 683
Score = 26.2 bits (55), Expect = 8.2
Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = +3
Query: 12 TY-CNRLNRRNTSKWLIEEQNYASTSSERTARPKCRRRIS 128
TY C+R N+ T+ + ++ ++ SSER + R IS
Sbjct: 469 TYTCSRSNQERTTSVITRDETRSARSSERPEPSRARSEIS 508
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,499,188
Number of Sequences: 27780
Number of extensions: 238935
Number of successful extensions: 710
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 677
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 708
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 587646290
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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