Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31982
         (399 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ...    26   2.5  
SPAC12B10.10 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    26   2.5  
SPBC530.15c ||SPBC661.01|spermidine family transporter |Schizosa...    25   5.7  
SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0...    24   10.0 

>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
           S0B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 287

 Score = 25.8 bits (54), Expect = 2.5
 Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 4/65 (6%)
 Frame = -1

Query: 351 SSIPYGFSGKMSAILNHVFNSMLRG--LPAN--NHVTNHSRDQRLIICANVQSYTFAIKE 184
           SS PYG    +     H   + + G   P N  N++T   R+ RLII  + ++   AIKE
Sbjct: 81  SSRPYGHRAVLK-FAAHTGATAIAGRFTPGNFTNYITRTYREPRLIIVTDPRADAQAIKE 139

Query: 183 KATKN 169
            +  N
Sbjct: 140 ASFVN 144


>SPAC12B10.10 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 419

 Score = 25.8 bits (54), Expect = 2.5
 Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = -3

Query: 178 NEK*PLKSESPRSAHIQFKKKTLNL-TRLNYCND 80
           N+  PL++E+  SAH  +   TLNL + LN   D
Sbjct: 261 NDLQPLQAEAFHSAHNGYSSSTLNLNSELNVMKD 294


>SPBC530.15c ||SPBC661.01|spermidine family transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 516

 Score = 24.6 bits (51), Expect = 5.7
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +3

Query: 129 CMCADLGDSLFSG 167
           C+CA  G S+FSG
Sbjct: 84  CLCAGFGSSIFSG 96


>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 292

 Score = 23.8 bits (49), Expect = 10.0
 Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
 Frame = -1

Query: 282 RGLPAN--NHVTNHSRDQRLIICANVQSYTFAIKEKATKN 169
           R  P N  N++T   R+ RLI+  + ++   AIKE +  N
Sbjct: 104 RFTPGNFTNYITRTYREPRLIVVTDPRADAQAIKEASFVN 143


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,544,819
Number of Sequences: 5004
Number of extensions: 27182
Number of successful extensions: 61
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 61
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 134126124
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)