Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31982
         (399 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0452 + 20931484-20933872,20933950-20934074                       28   2.4  
01_05_0271 + 20276965-20278674                                         27   4.1  
05_04_0384 - 20809397-20811547                                         27   7.2  
02_05_0019 - 25025218-25026964,25027084-25027478                       27   7.2  
02_05_0016 - 25004075-25005821,25006394-25006527                       27   7.2  
06_03_0792 + 24658324-24658763,24659167-24659387,24659765-246598...    26   9.5  

>06_03_0452 + 20931484-20933872,20933950-20934074
          Length = 837

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
 Frame = -1

Query: 324 KMSAILNHVFN--SMLRGLPANNHVTNHSRDQRLIICANVQSYTFAIKEKATKNDR*KAS 151
           K++A  N  FN   ++ GL  NN + +    +   IC +  SY F   +K   +DR +++
Sbjct: 599 KLTAFHNINFNYQDIICGLADNNLIGSGGSGKVYKICLHNNSYRFVAAKKIV-SDRSRSN 657

Query: 150 HLDRH 136
            L++H
Sbjct: 658 MLEKH 662


>01_05_0271 + 20276965-20278674
          Length = 569

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 11/34 (32%), Positives = 14/34 (41%)
 Frame = +3

Query: 120 FLNCMCADLGDSLFSGHFSLPSLLWQRYMIGRLH 221
           +  C C D G SLF        + W   + G LH
Sbjct: 265 YFRCGCMDSGHSLFGNLLDADLVTWSSLITGLLH 298


>05_04_0384 - 20809397-20811547
          Length = 716

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 8/56 (14%)
 Frame = -1

Query: 381 FQNKFLPYDYS-----SIPYGFSGKMSAILNHVFNSMLRGLPANNHVTN---HSRD 238
           F N  LP + S     S+ YGF G   A+ ++       G P  NHV +   H++D
Sbjct: 434 FYNNGLPSNLSGGRNPSLDYGFKGAEIAMASYCSELQFLGNPVTNHVQSAEQHNQD 489


>02_05_0019 - 25025218-25026964,25027084-25027478
          Length = 713

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 8/56 (14%)
 Frame = -1

Query: 381 FQNKFLPYDYS-----SIPYGFSGKMSAILNHVFNSMLRGLPANNHVTN---HSRD 238
           F N  LP + S     S+ YGF G   A+ ++       G P  NHV +   H++D
Sbjct: 431 FYNNGLPSNLSGGRNPSLDYGFKGAEIAMASYCSELQFLGNPVTNHVQSAEQHNQD 486


>02_05_0016 - 25004075-25005821,25006394-25006527
          Length = 626

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 8/56 (14%)
 Frame = -1

Query: 381 FQNKFLPYDYS-----SIPYGFSGKMSAILNHVFNSMLRGLPANNHVTN---HSRD 238
           F N  LP + S     S+ YGF G   A+ ++       G P  NHV +   H++D
Sbjct: 344 FYNNGLPSNLSGGRNPSLDYGFKGAEIAMASYCSELQFLGNPVTNHVQSAEQHNQD 399


>06_03_0792 +
           24658324-24658763,24659167-24659387,24659765-24659827,
           24659849-24660102
          Length = 325

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -3

Query: 211 PIIYLCHKREGNEK*PLKS 155
           P +YLCHK +  E  PL S
Sbjct: 230 PTVYLCHKPDAKETLPLVS 248


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,924,164
Number of Sequences: 37544
Number of extensions: 152243
Number of successful extensions: 278
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 273
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 278
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 682720236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)