Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31980
         (741 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1A6.08c |mug125||sequence orphan|Schizosaccharomyces pombe|c...    29   0.53 
SPAP7G5.06 |||amino acid permease, unknown 4|Schizosaccharomyces...    27   3.7  
SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|...    26   4.9  
SPBC577.13 |syj2||inositol-polyphosphate 5-phosphatase |Schizosa...    26   4.9  
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo...    25   8.6  

>SPAC1A6.08c |mug125||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 285

 Score = 29.5 bits (63), Expect = 0.53
 Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = -2

Query: 485 KERNLYTMRKTELCSEIFRLKLLKHSRSLDLSH-NSRDSSN 366
           K +NLY   K E C E + L   ++    + +H NSRD SN
Sbjct: 132 KSKNLYDSLKLEECIESWSLNQKQNENFYEHTHLNSRDDSN 172


>SPAP7G5.06 |||amino acid permease, unknown 4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 583

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -2

Query: 476 NLYTMRKTELCSEIFRLKLLKHSRSLD 396
           N ++     LC  +FRL + K  RSLD
Sbjct: 448 NFFSWGSINLCHIVFRLAMKKQGRSLD 474


>SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 743

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 7/18 (38%), Positives = 15/18 (83%)
 Frame = +1

Query: 568 QNIINLYIFKCILRRDYC 621
           Q+++N YI+  ++++DYC
Sbjct: 39  QSLLNSYIYDYLIKKDYC 56


>SPBC577.13 |syj2||inositol-polyphosphate 5-phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 889

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +1

Query: 385 LCDKSRLRECFKSFSLNISEHSSVF 459
           L  KS  R C+KS  +  S+H  VF
Sbjct: 831 LATKSFTRNCYKSCDIRCSDHRPVF 855


>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1811

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 15/29 (51%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = +3

Query: 159  LIKH-EQMKKKKLYCIKIEILYKLKGLLS 242
            LIKH + MKK+ +Y  K+E  Y L  LLS
Sbjct: 1380 LIKHLKHMKKESVYSKKLEEEYWLPFLLS 1408


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,683,618
Number of Sequences: 5004
Number of extensions: 51436
Number of successful extensions: 77
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)