Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31978
         (732 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6G10.07 |||nuclear cap-binding complex large subunit |Schizo...    30   0.30 
SPAC11D3.15 |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||M...    28   1.6  
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy...    26   6.4  
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch...    26   6.4  

>SPAC6G10.07 |||nuclear cap-binding complex large subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 780

 Score = 30.3 bits (65), Expect = 0.30
 Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
 Frame = +3

Query: 276 AFTKFFTLKRFKMVGVSRDAP-LGVQCIQKLYIKLCPRLQINRLRWYQVSVLILTYFTYM 452
           +F +FF L     +  + DA  +     + + + +   L+ NR+   QV   +  YFTY 
Sbjct: 292 SFKRFFELFNNFEIRTTPDASDVAASIFRDISVDVINHLEFNRVEAAQVLTDLDVYFTYK 351

Query: 453 TYHLTRKPIS 482
           T+ L   P++
Sbjct: 352 TFALRGTPVN 361


>SPAC11D3.15 |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1317

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 12/23 (52%), Positives = 17/23 (73%)
 Frame = +2

Query: 569  GAVQYDGREHVIRNIGFRLPVLI 637
            GA +Y G + VIR+I FR+PV +
Sbjct: 1191 GAGKYKGGDGVIRDIEFRIPVTL 1213


>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 709

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +2

Query: 425 PNTDLLHVYDVPFDEETYI 481
           PN DL+  YD PF  + Y+
Sbjct: 513 PNVDLVVQYDAPFSTDDYL 531


>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
            Mok12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2352

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -1

Query: 147  RYILKTPYYFFFILINLVFRVYFY 76
            RYIL  P++FF I   LV   +F+
Sbjct: 1994 RYILSLPFFFFGISFILVAITHFF 2017


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,912,636
Number of Sequences: 5004
Number of extensions: 57198
Number of successful extensions: 135
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)