Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31978
         (732 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0370 + 3275771-3275789,3275972-3276976,3277062-3277624           62   3e-10
04_04_0749 - 27757262-27757827,27758058-27759074,27761026-27761188     60   1e-09
06_01_0559 - 3973261-3973778,3974694-3975591                           47   2e-05
02_05_0156 + 26341904-26342801,26343469-26344148                       32   0.54 
10_08_0849 + 21040043-21040199,21040620-21040678,21040925-210424...    29   5.0  
06_02_0288 - 13821841-13822223,13822249-13822264                       28   8.8  

>08_01_0370 + 3275771-3275789,3275972-3276976,3277062-3277624
          Length = 528

 Score = 62.5 bits (145), Expect = 3e-10
 Identities = 37/88 (42%), Positives = 46/88 (52%), Gaps = 2/88 (2%)
 Frame = +3

Query: 393 INRLRWYQVSVLILTYFTYMTYHLTRKPISVVKSVLHQNCSSLXXXXXXXXXXXQWCN-- 566
           I  LR YQ  VL+LT+  Y  +H+TRK  S+VKSVL    + L              N  
Sbjct: 50  ITVLRTYQTLVLVLTFVAYTCFHMTRKIPSIVKSVLDPQ-TKLGSSPWGRLHTKNTLNIG 108

Query: 567 WAPFNTTDANTLLGTLDSAFLFSYAGAM 650
           W PFNT D + LLG +D AFL  Y+  M
Sbjct: 109 WLPFNTIDGSALLGEIDVAFLAVYSVGM 136



 Score = 30.3 bits (65), Expect = 1.6
 Identities = 11/24 (45%), Positives = 19/24 (79%)
 Frame = +2

Query: 659 SGMIAERVDLRYFLSLGMLTSAIF 730
           +G + +R+DLR FL++GM  +A+F
Sbjct: 139 AGHLGDRMDLRIFLTIGMFGTAVF 162


>04_04_0749 - 27757262-27757827,27758058-27759074,27761026-27761188
          Length = 581

 Score = 60.5 bits (140), Expect = 1e-09
 Identities = 44/120 (36%), Positives = 53/120 (44%), Gaps = 12/120 (10%)
 Frame = +3

Query: 327 RDAPLGVQCIQKLYIKLCPRLQINRLRWYQVSVLILTYFTYMTYHLTRKPISVVKSVLHQ 506
           R  PLG+Q  +      C R      R  Q  VLILT+ +Y +YH TRK  S+VKSVL  
Sbjct: 75  RMKPLGIQLYE------CARGSPISFRSCQALVLILTFLSYASYHATRKTTSIVKSVLDP 128

Query: 507 NCSSLXXXXXXXXXXXQ------------WCNWAPFNTTDANTLLGTLDSAFLFSYAGAM 650
              +L           Q            +  WAPFN  D   LLG +D AFL  YA  M
Sbjct: 129 KTENLGMLHWPSHLYLQDLRDAQGNMTALYSGWAPFNADDGTALLGEIDLAFLGVYAIGM 188


>06_01_0559 - 3973261-3973778,3974694-3975591
          Length = 471

 Score = 46.8 bits (106), Expect = 2e-05
 Identities = 33/84 (39%), Positives = 43/84 (51%)
 Frame = +3

Query: 399 RLRWYQVSVLILTYFTYMTYHLTRKPISVVKSVLHQNCSSLXXXXXXXXXXXQWCNWAPF 578
           RLR  Q +VL LT+  Y ++H +RKP S+VK+VL                     +WAPF
Sbjct: 16  RLRSRQYAVLGLTFAAYASFHASRKPPSIVKAVLS-------------------ADWAPF 56

Query: 579 NTTDANTLLGTLDSAFLFSYAGAM 650
           +       LG LD AFL +YA AM
Sbjct: 57  SGPRGPHRLGELDVAFLSAYAAAM 80


>02_05_0156 + 26341904-26342801,26343469-26344148
          Length = 525

 Score = 31.9 bits (69), Expect = 0.54
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = +3

Query: 423 VLILTYFTYMTYHLTRKPISVVKSVLHQ 506
           VL LT+  Y  YH +RKP S+VK  L +
Sbjct: 33  VLGLTFVAYALYHASRKPPSIVKRALSE 60



 Score = 28.3 bits (60), Expect = 6.6
 Identities = 11/22 (50%), Positives = 18/22 (81%)
 Frame = +2

Query: 656 VSGMIAERVDLRYFLSLGMLTS 721
           V+G + +R+DLR FL++GM+ S
Sbjct: 88  VAGHLGDRLDLRLFLAVGMIGS 109


>10_08_0849 +
           21040043-21040199,21040620-21040678,21040925-21042494,
           21042583-21042710,21042793-21043033,21043160-21043710
          Length = 901

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -2

Query: 707 PGRGNSASPLSRLSCQKPNHGARV*EQE 624
           P R N   P+S++   KPN G R+ E E
Sbjct: 334 PERANRPQPVSKIVILKPNQGRRIDETE 361


>06_02_0288 - 13821841-13822223,13822249-13822264
          Length = 132

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = -1

Query: 549 RSGRRRGAVSDYCSSDGG 496
           R+GRRRG  ++  SSDGG
Sbjct: 53  RAGRRRGRTAERASSDGG 70


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,246,560
Number of Sequences: 37544
Number of extensions: 353592
Number of successful extensions: 847
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 820
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 846
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1921741964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)