Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV31975
(304 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC336.10c |tif512||translation initiation factor|Schizosacchar... 130 6e-32
SPAC26H5.10c |tif51||translation initiation factor eIF5A|Schizos... 130 6e-32
SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase Ubp8|Schizos... 27 0.80
SPCC825.04c |||N-acetyltransferase |Schizosaccharomyces pombe|ch... 27 0.80
SPBC30B4.06c |||tRNA uridine 5-carboxymethylaminomethyl modifica... 25 2.4
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 25 3.2
SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces p... 24 4.3
SPAP8A3.03 |||ZIP zinc transporter 1|Schizosaccharomyces pombe|c... 24 5.6
SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pomb... 24 5.6
SPAC926.09c |fas1||fatty acid synthase beta subunit Fas1|Schizos... 23 7.5
SPAC869.11 ||SPAC922.08c|amino acid permease, unknown 6|Schizosa... 23 7.5
SPBC359.03c |||amino acid permease, unknown 8|Schizosaccharomyce... 23 7.5
SPAC688.11 |end4|sla2|Huntingtin-interacting protein homolog|Sch... 23 7.5
SPAC2F7.15 |rsm24||mitochondrial ribosomal protein subunit S24|S... 23 7.5
SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces pomb... 23 7.5
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 23 7.5
SPAC2G11.05c |||BRO1 domain protein|Schizosaccharomyces pombe|ch... 23 7.5
SPAC3H8.02 |||sec14 cytosolic factor family|Schizosaccharomyces ... 23 9.9
SPAC3G9.14 |sak1||transcriptional repressor Sak1|Schizosaccharom... 23 9.9
SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|c... 23 9.9
>SPBC336.10c |tif512||translation initiation
factor|Schizosaccharomyces pombe|chr 2|||Manual
Length = 157
Score = 130 bits (313), Expect = 6e-32
Identities = 56/67 (83%), Positives = 62/67 (92%)
Frame = +3
Query: 102 FPMQCSALRKNGFVMLKGRPCKIVEMSTSKTGKHGHAKVHLVGIDIFNGKKYEDXXPSTH 281
FPMQCSALRKNG V++KGRPCKIV+MSTSKTGKHGHAKVH+V +DIFNG+KYED PSTH
Sbjct: 20 FPMQCSALRKNGHVVIKGRPCKIVDMSTSKTGKHGHAKVHIVALDIFNGRKYEDMSPSTH 79
Query: 282 NMDVPHV 302
NMDVP V
Sbjct: 80 NMDVPVV 86
>SPAC26H5.10c |tif51||translation initiation factor
eIF5A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 157
Score = 130 bits (313), Expect = 6e-32
Identities = 56/67 (83%), Positives = 62/67 (92%)
Frame = +3
Query: 102 FPMQCSALRKNGFVMLKGRPCKIVEMSTSKTGKHGHAKVHLVGIDIFNGKKYEDXXPSTH 281
FPMQCSALRKNG V++KGRPCKIV+MSTSKTGKHGHAKVH+V +DIFNG+KYED PSTH
Sbjct: 20 FPMQCSALRKNGHVVIKGRPCKIVDMSTSKTGKHGHAKVHIVALDIFNGRKYEDMSPSTH 79
Query: 282 NMDVPHV 302
NMDVP V
Sbjct: 80 NMDVPVV 86
>SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase
Ubp8|Schizosaccharomyces pombe|chr 1|||Manual
Length = 449
Score = 26.6 bits (56), Expect = 0.80
Identities = 13/52 (25%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Frame = +3
Query: 105 PMQCSALRKNGFVMLKGRPCKIVEMSTSKTGK-HGHAKVHLVGIDIFNGKKY 257
P +CS ++ ++ C V G+ H H++G+D+ NG Y
Sbjct: 35 PRRCSTCKRINKRSIRCLSCHSVGCLWGHHGEEHAMEHTHMIGVDVKNGHTY 86
>SPCC825.04c |||N-acetyltransferase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 204
Score = 26.6 bits (56), Expect = 0.80
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +2
Query: 137 FRYAEGSSMQDC*NVHIQNRKARPR*SSLGWD 232
+ + E +Q C N+ +N +A R SS GWD
Sbjct: 41 YHHLEKGLLQQCFNLVKKNMEALYRQSSFGWD 72
>SPBC30B4.06c |||tRNA uridine 5-carboxymethylaminomethyl
modification enzyme|Schizosaccharomyces pombe|chr
2|||Manual
Length = 666
Score = 25.0 bits (52), Expect = 2.4
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = -3
Query: 107 GEGGEAPESPVSKCVSSM 54
G GE P P+SKC+S++
Sbjct: 189 GRYGERPSLPLSKCLSNL 206
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 24.6 bits (51), Expect = 3.2
Identities = 12/40 (30%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Frame = +3
Query: 120 ALRKNGFVMLKGRPCKIV-EMSTSKTGKHGHAKVHLVGID 236
AL + + ++KGRPC+I+ K G V + +D
Sbjct: 137 ALDELNYTLIKGRPCRIMWSQRDPSLRKMGTGNVFIKNLD 176
>SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 728
Score = 24.2 bits (50), Expect = 4.3
Identities = 7/29 (24%), Positives = 18/29 (62%)
Frame = -3
Query: 227 NQVNFSVAVLSGFGCGHFNNLAWTTLQHN 141
++++FSV L+ G G + + W ++++
Sbjct: 428 DEISFSVRYLASLGLGDYTKVTWFLVKNS 456
>SPAP8A3.03 |||ZIP zinc transporter 1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 453
Score = 23.8 bits (49), Expect = 5.6
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = -1
Query: 199 FPVLDVDISTILHGRPFSITKP 134
F ++D I ++H RP S++KP
Sbjct: 212 FFLMDKGIRILIHERPSSLSKP 233
>SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1647
Score = 23.8 bits (49), Expect = 5.6
Identities = 14/40 (35%), Positives = 17/40 (42%)
Frame = -3
Query: 200 LSGFGCGHFNNLAWTTLQHNETVFTQGRTLHGEGGEAPES 81
L+ G FNN WT L + F +GG AP S
Sbjct: 643 LAHLSTGSFNNALWTAL---DNWFVSSVLFDVDGGLAPMS 679
>SPAC926.09c |fas1||fatty acid synthase beta subunit
Fas1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2073
Score = 23.4 bits (48), Expect = 7.5
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = +2
Query: 56 SKTHTSTPETPGPHHLPHAMFGPA*KRFRYAEGSSMQD 169
S T + E PG H + H M+ A R R+ E + Q+
Sbjct: 1582 SPTFAAFVELPGTHGITHGMYTSAAAR-RFVETYAAQN 1618
>SPAC869.11 ||SPAC922.08c|amino acid permease, unknown
6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 580
Score = 23.4 bits (48), Expect = 7.5
Identities = 8/13 (61%), Positives = 10/13 (76%)
Frame = -3
Query: 143 NETVFTQGRTLHG 105
N + +T GRTLHG
Sbjct: 370 NSSTYTAGRTLHG 382
>SPBC359.03c |||amino acid permease, unknown 8|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 579
Score = 23.4 bits (48), Expect = 7.5
Identities = 8/13 (61%), Positives = 10/13 (76%)
Frame = -3
Query: 143 NETVFTQGRTLHG 105
N + +T GRTLHG
Sbjct: 370 NSSTYTAGRTLHG 382
>SPAC688.11 |end4|sla2|Huntingtin-interacting protein
homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1092
Score = 23.4 bits (48), Expect = 7.5
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -3
Query: 260 FILFTIEDINPNQVNFSVAVLSGFGCG 180
FIL TIE+ + N +FS A + F G
Sbjct: 713 FILSTIENASNNATDFSTAFNNYFADG 739
>SPAC2F7.15 |rsm24||mitochondrial ribosomal protein subunit
S24|Schizosaccharomyces pombe|chr 1|||Manual
Length = 258
Score = 23.4 bits (48), Expect = 7.5
Identities = 7/16 (43%), Positives = 11/16 (68%)
Frame = -3
Query: 179 HFNNLAWTTLQHNETV 132
H NNL+W +Q +E +
Sbjct: 68 HSNNLSWQKIQEHEVI 83
>SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 814
Score = 23.4 bits (48), Expect = 7.5
Identities = 7/11 (63%), Positives = 9/11 (81%)
Frame = -3
Query: 161 WTTLQHNETVF 129
WTTL+HN +F
Sbjct: 195 WTTLEHNGVIF 205
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 23.4 bits (48), Expect = 7.5
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = +2
Query: 56 SKTHTSTPETPGPHHLPHAMFGPA 127
S HT + PGP +P A +G A
Sbjct: 241 SPMHTYSSAVPGPISVPSAPYGRA 264
>SPAC2G11.05c |||BRO1 domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 701
Score = 23.4 bits (48), Expect = 7.5
Identities = 8/18 (44%), Positives = 12/18 (66%)
Frame = -1
Query: 238 ISIPTK*TLAWPCFPVLD 185
++IPTK T W C P+ +
Sbjct: 4 LNIPTKNTFHWSCDPLFN 21
>SPAC3H8.02 |||sec14 cytosolic factor family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 444
Score = 23.0 bits (47), Expect = 9.9
Identities = 8/22 (36%), Positives = 11/22 (50%)
Frame = +2
Query: 35 KTQQWVTSKTHTSTPETPGPHH 100
+T+ W T KTH S + H
Sbjct: 37 RTESWYTVKTHLSDDSSSSSSH 58
>SPAC3G9.14 |sak1||transcriptional repressor
Sak1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 766
Score = 23.0 bits (47), Expect = 9.9
Identities = 8/21 (38%), Positives = 12/21 (57%)
Frame = +3
Query: 177 MSTSKTGKHGHAKVHLVGIDI 239
+ T + G GH+K H GI +
Sbjct: 154 IKTRRLGMRGHSKYHYCGIKL 174
>SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 502
Score = 23.0 bits (47), Expect = 9.9
Identities = 8/25 (32%), Positives = 15/25 (60%)
Frame = +2
Query: 2 GHISFLTVVKFKTQQWVTSKTHTST 76
GH + +T V++ Q W+ S ++ T
Sbjct: 267 GHTAPITCVRWGGQNWIYSSSYDKT 291
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,344,741
Number of Sequences: 5004
Number of extensions: 25641
Number of successful extensions: 82
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 75747362
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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