Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV31975
(304 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z49967-1|CAA90247.1| 161|Caenorhabditis elegans Hypothetical pr... 121 1e-28
Z27079-13|CAA81597.2| 195|Caenorhabditis elegans Hypothetical p... 119 5e-28
U70856-2|AAB09164.1| 461|Caenorhabditis elegans Hypothetical pr... 28 1.5
AF047652-6|AAC04390.3| 397|Caenorhabditis elegans Hypothetical ... 27 2.0
U13642-9|AAG00035.1| 187|Caenorhabditis elegans Clock (biologic... 27 3.4
Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical pr... 26 4.5
M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-re... 26 4.5
U40937-1|AAA81693.1| 396|Caenorhabditis elegans Collagen protei... 26 6.0
AF040653-6|AAB95032.1| 508|Caenorhabditis elegans F-box b prote... 25 7.9
>Z49967-1|CAA90247.1| 161|Caenorhabditis elegans Hypothetical
protein F54C9.1 protein.
Length = 161
Score = 121 bits (291), Expect = 1e-28
Identities = 55/67 (82%), Positives = 57/67 (85%)
Frame = +3
Query: 102 FPMQCSALRKNGFVMLKGRPCKIVEMSTSKTGKHGHAKVHLVGIDIFNGKKYEDXXPSTH 281
FP QCSALRKN VM+KGRPCKIVEMSTSKTGKHGHAKVH+V IDIF KK ED PSTH
Sbjct: 22 FPKQCSALRKNEHVMIKGRPCKIVEMSTSKTGKHGHAKVHMVAIDIFTSKKLEDICPSTH 81
Query: 282 NMDVPHV 302
NMDVP V
Sbjct: 82 NMDVPVV 88
Score = 26.2 bits (55), Expect = 4.5
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = +1
Query: 58 EDTHFDTGDSGASPPSP 108
+D HF TGDSGA+ P
Sbjct: 7 DDEHFHTGDSGAAATFP 23
>Z27079-13|CAA81597.2| 195|Caenorhabditis elegans Hypothetical
protein T05G5.10 protein.
Length = 195
Score = 119 bits (286), Expect = 5e-28
Identities = 54/67 (80%), Positives = 57/67 (85%)
Frame = +3
Query: 102 FPMQCSALRKNGFVMLKGRPCKIVEMSTSKTGKHGHAKVHLVGIDIFNGKKYEDXXPSTH 281
FP QCSALRKN VM++GRPCKIVEMSTSKTGKHGHAKVH+V IDIF KK ED PSTH
Sbjct: 56 FPKQCSALRKNEHVMIRGRPCKIVEMSTSKTGKHGHAKVHMVAIDIFTTKKLEDICPSTH 115
Query: 282 NMDVPHV 302
NMDVP V
Sbjct: 116 NMDVPVV 122
>U70856-2|AAB09164.1| 461|Caenorhabditis elegans Hypothetical
protein F57F4.1 protein.
Length = 461
Score = 27.9 bits (59), Expect = 1.5
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -3
Query: 140 ETVFTQGRTLHGEGGEAPESPVSKCVSSM 54
ET F G LHGE P+ P+ VSS+
Sbjct: 42 ETCFYHGGALHGELPTEPDIPIDLMVSSI 70
>AF047652-6|AAC04390.3| 397|Caenorhabditis elegans Hypothetical
protein C34H4.1 protein.
Length = 397
Score = 27.5 bits (58), Expect = 2.0
Identities = 14/52 (26%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Frame = +2
Query: 5 HISFLTVVKFK-TQQWVTSKTHTSTPETPGPHHLPHAMFGPA*KRFRYAEGS 157
HI + + FK +QQWV T+ +T T + + ++ + F+Y E +
Sbjct: 231 HIRAIGGISFKVSQQWVDMSTYQTTAATTTGYTMSQSVSNNSTVNFKYTENA 282
>U13642-9|AAG00035.1| 187|Caenorhabditis elegans Clock (biological
timing) abnormalityprotein 1 protein.
Length = 187
Score = 26.6 bits (56), Expect = 3.4
Identities = 13/39 (33%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
Frame = +2
Query: 41 QQWVTSKTHTSTPET-PGPHHLPHAMFGPA*KRFRYAEG 154
+ W K H T E H++PH +F P YA G
Sbjct: 55 KMWDEEKEHLDTMERLAAKHNVPHTVFSPVFSVAAYALG 93
>Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical protein
F29D11.1 protein.
Length = 4753
Score = 26.2 bits (55), Expect = 4.5
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = +1
Query: 46 MGDIEDTHFDTGDSGASPPSPCNVRPCVKTVSLC 147
+G D+ D D+ P+ CN R C + +LC
Sbjct: 2808 LGATCDSKPDCADASDENPNYCNTRSCPEDYNLC 2841
>M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-related
protein protein.
Length = 4753
Score = 26.2 bits (55), Expect = 4.5
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = +1
Query: 46 MGDIEDTHFDTGDSGASPPSPCNVRPCVKTVSLC 147
+G D+ D D+ P+ CN R C + +LC
Sbjct: 2808 LGATCDSKPDCADASDENPNYCNTRSCPEDYNLC 2841
>U40937-1|AAA81693.1| 396|Caenorhabditis elegans Collagen protein
164 protein.
Length = 396
Score = 25.8 bits (54), Expect = 6.0
Identities = 13/45 (28%), Positives = 20/45 (44%)
Frame = -3
Query: 173 NNLAWTTLQHNETVFTQGRTLHGEGGEAPESPVSKCVSSMSPIVV 39
+N+ W L NE+ R + EGG A E + SP+ +
Sbjct: 56 SNVLWKELVTNESHRRVARQTYKEGGAAGEGSPAATAPEASPVKI 100
>AF040653-6|AAB95032.1| 508|Caenorhabditis elegans F-box b protein
protein 51 protein.
Length = 508
Score = 25.4 bits (53), Expect = 7.9
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +3
Query: 132 NGFVMLKGRPCKIVEMSTSKTGKHGHAKVHLVGIDIFNGKK 254
N ++LKG P I + + +VH GIDI+ G++
Sbjct: 223 NRDIILKGIPYNIASLDRKIKFRDYSREVHAGGIDIYLGQE 263
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,628,211
Number of Sequences: 27780
Number of extensions: 154076
Number of successful extensions: 400
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 391
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 400
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 323867940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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