Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31975
         (304 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855483-1|ABH88170.1|  117|Apis mellifera chemosensory protein ...    24   0.36 
AJ973398-1|CAJ01445.1|  117|Apis mellifera hypothetical protein ...    24   0.36 
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    22   1.4  
DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor pro...    22   1.9  
DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor pro...    22   1.9  
AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled rec...    22   1.9  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    21   2.5  
X91509-1|CAA62809.1|  103|Apis mellifera histone H4 protein.           21   3.3  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      21   4.4  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    20   7.7  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    20   7.7  

>DQ855483-1|ABH88170.1|  117|Apis mellifera chemosensory protein 2
           protein.
          Length = 117

 Score = 24.2 bits (50), Expect = 0.36
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = -3

Query: 98  GEAPESPVSKCVSSMSPIVV 39
           GEAP  PV + + S++P+V+
Sbjct: 57  GEAPCDPVGRRLKSLAPLVL 76


>AJ973398-1|CAJ01445.1|  117|Apis mellifera hypothetical protein
           protein.
          Length = 117

 Score = 24.2 bits (50), Expect = 0.36
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = -3

Query: 98  GEAPESPVSKCVSSMSPIVV 39
           GEAP  PV + + S++P+V+
Sbjct: 57  GEAPCDPVGRRLKSLAPLVL 76


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 22.2 bits (45), Expect = 1.4
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -1

Query: 199 FPVLDVDISTILHGR 155
           FPVL V I+ +LHG+
Sbjct: 8   FPVLFVIINVLLHGQ 22


>DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 21.8 bits (44), Expect = 1.9
 Identities = 8/27 (29%), Positives = 12/27 (44%)
 Frame = +1

Query: 178 CPHPKPESTATLKFTWLGLISSMVKSM 258
           CP   P        TWLG ++S +  +
Sbjct: 353 CPDCCPSDRMVYFITWLGYVNSALNPL 379


>DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 21.8 bits (44), Expect = 1.9
 Identities = 8/27 (29%), Positives = 12/27 (44%)
 Frame = +1

Query: 178 CPHPKPESTATLKFTWLGLISSMVKSM 258
           CP   P        TWLG ++S +  +
Sbjct: 353 CPDCCPSDRMVYFITWLGYVNSALNPL 379


>AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled
           receptor protein.
          Length = 399

 Score = 21.8 bits (44), Expect = 1.9
 Identities = 8/27 (29%), Positives = 12/27 (44%)
 Frame = +1

Query: 178 CPHPKPESTATLKFTWLGLISSMVKSM 258
           CP   P        TWLG ++S +  +
Sbjct: 353 CPDCCPSDRMVYFITWLGYVNSALNPL 379


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.4 bits (43), Expect = 2.5
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = +2

Query: 53  TSKTHTSTPETPGP 94
           T   H   PETPGP
Sbjct: 462 TPHHHPHPPETPGP 475



 Score = 20.6 bits (41), Expect = 4.4
 Identities = 6/6 (100%), Positives = 6/6 (100%)
 Frame = +2

Query: 83  TPGPHH 100
           TPGPHH
Sbjct: 411 TPGPHH 416


>X91509-1|CAA62809.1|  103|Apis mellifera histone H4 protein.
          Length = 103

 Score = 21.0 bits (42), Expect = 3.3
 Identities = 8/10 (80%), Positives = 9/10 (90%)
 Frame = -3

Query: 125 QGRTLHGEGG 96
           QGRTL+G GG
Sbjct: 94  QGRTLYGFGG 103


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 20.6 bits (41), Expect = 4.4
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +3

Query: 255 YEDXXPSTHNMDV 293
           YE   PSTH MD+
Sbjct: 46  YERFSPSTHLMDL 58


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 19.8 bits (39), Expect = 7.7
 Identities = 6/15 (40%), Positives = 8/15 (53%)
 Frame = -2

Query: 297 GVRPCCVWRXXYLHT 253
           G  PCC W+  +  T
Sbjct: 484 GYYPCCWWKICWTIT 498


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 19.8 bits (39), Expect = 7.7
 Identities = 6/15 (40%), Positives = 8/15 (53%)
 Frame = -2

Query: 297 GVRPCCVWRXXYLHT 253
           G  PCC W+  +  T
Sbjct: 537 GYYPCCWWKICWTIT 551


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 91,826
Number of Sequences: 438
Number of extensions: 1974
Number of successful extensions: 17
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  6368931
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)