Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31974
         (738 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70306-2|CAA94323.2|  785|Caenorhabditis elegans Hypothetical pr...    30   1.5  
AF000417-1|AAC39118.1|  785|Caenorhabditis elegans high-affinity...    30   1.5  
Z92834-6|CAB07391.1|  312|Caenorhabditis elegans Hypothetical pr...    29   4.5  
Z77655-1|CAB01137.1|  393|Caenorhabditis elegans Hypothetical pr...    29   4.5  
U88167-6|AAB42223.1|  461|Caenorhabditis elegans Acetylcholine r...    28   6.0  
X83887-1|CAA58764.1|  498|Caenorhabditis elegans alpha-1 subunit...    28   7.9  
AY523511-1|AAR98633.1|  498|Caenorhabditis elegans acetylcholine...    28   7.9  
AF022973-7|AAN84815.1|  480|Caenorhabditis elegans Acetylcholine...    28   7.9  
AF022973-6|AAC25796.1|  498|Caenorhabditis elegans Acetylcholine...    28   7.9  

>Z70306-2|CAA94323.2|  785|Caenorhabditis elegans Hypothetical
           protein C06G8.2 protein.
          Length = 785

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 9/27 (33%), Positives = 18/27 (66%)
 Frame = -1

Query: 471 FLASYWTVLSLTTFYVCRGILISFTLI 391
           ++  +WT+  ++ FY C  IL++F+ I
Sbjct: 95  YIGKFWTIFFISIFYACGQILLAFSSI 121


>AF000417-1|AAC39118.1|  785|Caenorhabditis elegans high-affinity
           peptide transporter protein.
          Length = 785

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 9/27 (33%), Positives = 18/27 (66%)
 Frame = -1

Query: 471 FLASYWTVLSLTTFYVCRGILISFTLI 391
           ++  +WT+  ++ FY C  IL++F+ I
Sbjct: 95  YIGKFWTIFFISIFYACGQILLAFSSI 121


>Z92834-6|CAB07391.1|  312|Caenorhabditis elegans Hypothetical
           protein F39B2.11 protein.
          Length = 312

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
 Frame = +2

Query: 554 VRVLRQTRPRLAPCGTVDPLPQTSYVPCPLVDIPQ--NVLKHC 676
           VRV++ TRP  +P G +  + QT     P+ D  +  ++LK C
Sbjct: 33  VRVIQSTRPWRSPSGELPMVAQTEGEAKPVTDFEKFVDILKKC 75


>Z77655-1|CAB01137.1|  393|Caenorhabditis elegans Hypothetical
           protein C56A3.1 protein.
          Length = 393

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 16/37 (43%), Positives = 17/37 (45%)
 Frame = -1

Query: 687 TTLTQCLRTFCGMSTSGHGTYEVCGSGSTVPQGASLG 577
           +TLT C   F GM   G G    C  G   PQ AS G
Sbjct: 11  STLTLCHAIFFGMGGGGGGGGGGCCCGCGTPQPASCG 47


>U88167-6|AAB42223.1|  461|Caenorhabditis elegans Acetylcholine
           receptor protein 11 protein.
          Length = 461

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +2

Query: 80  P*PALHGKIHLRTLELYYFFSISIPSF*YKYMA 178
           P P ++  +H+R   LYY F++ IPS     MA
Sbjct: 225 PYPTVNYYLHIRRRTLYYGFNLIIPSLLISLMA 257


>X83887-1|CAA58764.1|  498|Caenorhabditis elegans alpha-1 subunit of
           nicotinic acetylcholinereceptor protein.
          Length = 498

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +2

Query: 62  DCTTQRP*PALHGKIHLRTLELYYFFSISIP 154
           DC  + P P +H  +H+R   LYY F++ +P
Sbjct: 210 DCCPE-PYPDVHFYLHMRRRTLYYGFNLIMP 239


>AY523511-1|AAR98633.1|  498|Caenorhabditis elegans acetylcholine
           receptor (57.1 kD)alternative variant 1 protein.
          Length = 498

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +2

Query: 62  DCTTQRP*PALHGKIHLRTLELYYFFSISIP 154
           DC  + P P +H  +H+R   LYY F++ +P
Sbjct: 210 DCCPE-PYPDVHFYLHMRRRTLYYGFNLIMP 239


>AF022973-7|AAN84815.1|  480|Caenorhabditis elegans Acetylcholine
           receptor protein16, isoform b protein.
          Length = 480

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +2

Query: 62  DCTTQRP*PALHGKIHLRTLELYYFFSISIP 154
           DC  + P P +H  +H+R   LYY F++ +P
Sbjct: 210 DCCPE-PYPDVHFYLHMRRRTLYYGFNLIMP 239


>AF022973-6|AAC25796.1|  498|Caenorhabditis elegans Acetylcholine
           receptor protein16, isoform a protein.
          Length = 498

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +2

Query: 62  DCTTQRP*PALHGKIHLRTLELYYFFSISIP 154
           DC  + P P +H  +H+R   LYY F++ +P
Sbjct: 210 DCCPE-PYPDVHFYLHMRRRTLYYGFNLIMP 239


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,654,470
Number of Sequences: 27780
Number of extensions: 346382
Number of successful extensions: 809
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 787
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 809
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1735436670
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)