Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31972
         (530 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z27079-13|CAA81597.2|  195|Caenorhabditis elegans Hypothetical p...   122   2e-28
Z49967-1|CAA90247.1|  161|Caenorhabditis elegans Hypothetical pr...   119   1e-27
CU457743-2|CAM36365.1|  695|Caenorhabditis elegans Hypothetical ...    31   0.52 
Z83123-10|CAB05609.2|  988|Caenorhabditis elegans Hypothetical p...    29   2.7  
Z74031-2|CAA98454.2|  568|Caenorhabditis elegans Hypothetical pr...    29   2.7  
U70856-4|AAB09167.1| 2090|Caenorhabditis elegans Hypothetical pr...    29   2.7  
U70856-3|AAB09166.1| 2153|Caenorhabditis elegans Gei-4(four) int...    29   2.7  
AY095296-1|AAM26298.1|  988|Caenorhabditis elegans RecQ helicase...    29   2.7  
Z70310-6|CAE17904.1|  293|Caenorhabditis elegans Hypothetical pr...    28   4.8  
U88178-1|AAC24412.1|  296|Caenorhabditis elegans Hypothetical pr...    27   6.3  
AY204179-1|AAO39183.1|  486|Caenorhabditis elegans nuclear recep...    27   6.3  
AF332209-1|AAK17980.1|  350|Caenorhabditis elegans nuclear recep...    27   6.3  
AF078783-3|AAN63404.1|  504|Caenorhabditis elegans Nuclear hormo...    27   6.3  
AF078783-2|AAK82901.1|  486|Caenorhabditis elegans Nuclear hormo...    27   6.3  
AF106576-1|AAC78177.2|  664|Caenorhabditis elegans Hypothetical ...    27   8.4  

>Z27079-13|CAA81597.2|  195|Caenorhabditis elegans Hypothetical
           protein T05G5.10 protein.
          Length = 195

 Score =  122 bits (293), Expect = 2e-28
 Identities = 58/118 (49%), Positives = 83/118 (70%), Gaps = 2/118 (1%)
 Frame = +1

Query: 85  RLLKCPHPKPGKHGHAKVHLVGIDIFNGKKYEDICPSTHNMDVPHVKREDYQLTDISDDG 264
           ++++    K GKHGHAKVH+V IDIF  KK EDICPSTHNMDVP VKR +Y L  I +DG
Sbjct: 77  KIVEMSTSKTGKHGHAKVHMVAIDIFTTKKLEDICPSTHNMDVPVVKRREYILMSI-EDG 135

Query: 265 YLTLM-ADNGDLREDLKIPDGDLGTQLRTDFDSGK-ELLCTVLKSCGEECVIAVKANT 432
           + +LM  ++ +L++DLK+P+GDLG  +R   +  +  +L  V+ +CGEE ++  K +T
Sbjct: 136 FCSLMDPESCELKDDLKMPEGDLGNTIREALEKDEGSVLVQVVAACGEEAILGYKIST 193



 Score = 73.3 bits (172), Expect = 1e-13
 Identities = 33/39 (84%), Positives = 36/39 (92%)
 Frame = +3

Query: 3   SGASATFPMQCSALRKNGFVMLKGRPCKIVEMSTSKTGK 119
           SGA+ATFP QCSALRKN  VM++GRPCKIVEMSTSKTGK
Sbjct: 50  SGAAATFPKQCSALRKNEHVMIRGRPCKIVEMSTSKTGK 88


>Z49967-1|CAA90247.1|  161|Caenorhabditis elegans Hypothetical
           protein F54C9.1 protein.
          Length = 161

 Score =  119 bits (287), Expect = 1e-27
 Identities = 58/118 (49%), Positives = 82/118 (69%), Gaps = 2/118 (1%)
 Frame = +1

Query: 85  RLLKCPHPKPGKHGHAKVHLVGIDIFNGKKYEDICPSTHNMDVPHVKREDYQLTDISDDG 264
           ++++    K GKHGHAKVH+V IDIF  KK EDICPSTHNMDVP VKR +Y L  I DDG
Sbjct: 43  KIVEMSTSKTGKHGHAKVHMVAIDIFTSKKLEDICPSTHNMDVPVVKRREYLLMAI-DDG 101

Query: 265 YLTLM-ADNGDLREDLKIPDGDLGTQLRTDFDSGK-ELLCTVLKSCGEECVIAVKANT 432
           Y +LM  ++ + ++DLK+PD +LG Q+R  ++  +  +L  V+ + GEE ++  K +T
Sbjct: 102 YCSLMDPESCEQKDDLKLPDTELGQQIRDAYEKDEGSVLVQVVSAIGEEAILGWKVST 159



 Score = 74.5 bits (175), Expect = 4e-14
 Identities = 34/39 (87%), Positives = 36/39 (92%)
 Frame = +3

Query: 3   SGASATFPMQCSALRKNGFVMLKGRPCKIVEMSTSKTGK 119
           SGA+ATFP QCSALRKN  VM+KGRPCKIVEMSTSKTGK
Sbjct: 16  SGAAATFPKQCSALRKNEHVMIKGRPCKIVEMSTSKTGK 54


>CU457743-2|CAM36365.1|  695|Caenorhabditis elegans Hypothetical
           protein K09E10.2 protein.
          Length = 695

 Score = 31.1 bits (67), Expect = 0.52
 Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 3/72 (4%)
 Frame = +1

Query: 202 NMDVPHVKREDYQLTDI--SDDGYLTLMADNGDLREDLKIPDGDLGTQLRTD-FDSGKEL 372
           N  +P +K++ Y L     ++ GY+  +   GDL+   KI D      LR D ++ G+  
Sbjct: 573 NKFIPFIKKKLYILDSFPRANSGYIARVP--GDLKNGKKIEDISKA-MLRPDGYERGRLR 629

Query: 373 LCTVLKSCGEEC 408
              ++K CG++C
Sbjct: 630 HAALVKECGDKC 641


>Z83123-10|CAB05609.2|  988|Caenorhabditis elegans Hypothetical
            protein T04A11.6 protein.
          Length = 988

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 26/108 (24%), Positives = 50/108 (46%)
 Frame = +1

Query: 76   VHARLLKCPHPKPGKHGHAKVHLVGIDIFNGKKYEDICPSTHNMDVPHVKREDYQLTDIS 255
            +H RL   P+       +A++   G D+ NGKK   +    H +     KR++  L ++S
Sbjct: 731  IHERLYSVPNQAAAVFAYAELTEAGRDLANGKKTAKV--YLHIVTCER-KRKNAGLIELS 787

Query: 256  DDGYLTLMADNGDLREDLKIPDGDLGTQLRTDFDSGKELLCTVLKSCG 399
            +   + ++++   L+E   +  GD+ T+   D      L+  V +S G
Sbjct: 788  N---MNIVSEAQALKERHMVKHGDVFTRCLQDL---THLITAVAESSG 829


>Z74031-2|CAA98454.2|  568|Caenorhabditis elegans Hypothetical
           protein F32D8.2 protein.
          Length = 568

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 7/59 (11%)
 Frame = +1

Query: 157 IFNGKKYEDICPSTHNMDVPHVKREDYQLT------DISDDGYLTLMADN-GDLREDLK 312
           IF   + ED+   T +    H+ R + ++       D+S DGYLTL + N  DL  D++
Sbjct: 74  IFFPNEDEDVFGLTPDKSKQHIVRGECKINELNEKVDLSSDGYLTLRSKNTNDLPSDIR 132


>U70856-4|AAB09167.1| 2090|Caenorhabditis elegans Hypothetical protein
            F57F4.4 protein.
          Length = 2090

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 13/50 (26%), Positives = 22/50 (44%), Gaps = 3/50 (6%)
 Frame = +2

Query: 284  TMVTCVRTSKSRMVTSAHSCVLTSTAARNCCAP---C*NPAVRSASSPSK 424
            T++TC  T+  + +  ++SC         CC     C NP   +   P+K
Sbjct: 1822 TLLTCDPTTVCQQLNMSNSCQTVEPGVSGCCCDTDGCLNPLTNTYPGPAK 1871


>U70856-3|AAB09166.1| 2153|Caenorhabditis elegans Gei-4(four)
            interacting proteinprotein 1 protein.
          Length = 2153

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 13/50 (26%), Positives = 22/50 (44%), Gaps = 3/50 (6%)
 Frame = +2

Query: 284  TMVTCVRTSKSRMVTSAHSCVLTSTAARNCCAP---C*NPAVRSASSPSK 424
            T++TC  T+  + +  ++SC         CC     C NP   +   P+K
Sbjct: 1822 TLLTCDPTTVCQQLNMSNSCQTVEPGVSGCCCDTDGCLNPLTNTYPGPAK 1871


>AY095296-1|AAM26298.1|  988|Caenorhabditis elegans RecQ helicase
            protein.
          Length = 988

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 26/108 (24%), Positives = 50/108 (46%)
 Frame = +1

Query: 76   VHARLLKCPHPKPGKHGHAKVHLVGIDIFNGKKYEDICPSTHNMDVPHVKREDYQLTDIS 255
            +H RL   P+       +A++   G D+ NGKK   +    H +     KR++  L ++S
Sbjct: 731  IHERLYSVPNQAAAVFAYAELTEAGRDLANGKKTAKV--YLHIVTCER-KRKNAGLIELS 787

Query: 256  DDGYLTLMADNGDLREDLKIPDGDLGTQLRTDFDSGKELLCTVLKSCG 399
            +   + ++++   L+E   +  GD+ T+   D      L+  V +S G
Sbjct: 788  N---MNIVSEAQALKERHMVKHGDVFTRCLQDL---THLITAVAESSG 829


>Z70310-6|CAE17904.1|  293|Caenorhabditis elegans Hypothetical
           protein R11A8.8 protein.
          Length = 293

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +1

Query: 262 GYLTLMADNGDLREDLKIPDGDLGTQLRTDFDSGKELLC 378
           GYL      GD ++++K+ +G    Q+ +D D  K   C
Sbjct: 251 GYLPQQPKKGDKKKNIKLKEGRTEHQIVSDIDPAKLRAC 289


>U88178-1|AAC24412.1|  296|Caenorhabditis elegans Hypothetical
           protein W09C3.4 protein.
          Length = 296

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 16/40 (40%), Positives = 22/40 (55%)
 Frame = -1

Query: 425 ALTAMTHSSPQDFSTVHNNSLPLSKSVRNCVPRSPSGILR 306
           ALT+MT   PQ       NSL  SK +   + ++P G+LR
Sbjct: 33  ALTSMTPGLPQTVRQTAINSLLSSKKL--AIQQAPGGVLR 70


>AY204179-1|AAO39183.1|  486|Caenorhabditis elegans nuclear receptor
           NHR-80 protein.
          Length = 486

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +1

Query: 1   TPGPQPPSPCNVRPCVKTV 57
           TPGP P +PC+  P V T+
Sbjct: 174 TPGPSPMAPCSAGPDVLTL 192


>AF332209-1|AAK17980.1|  350|Caenorhabditis elegans nuclear
          receptor NHR-80 protein.
          Length = 350

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +1

Query: 1  TPGPQPPSPCNVRPCVKTV 57
          TPGP P +PC+  P V T+
Sbjct: 38 TPGPSPMAPCSAGPDVLTL 56


>AF078783-3|AAN63404.1|  504|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 80, isoform b protein.
          Length = 504

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +1

Query: 1   TPGPQPPSPCNVRPCVKTV 57
           TPGP P +PC+  P V T+
Sbjct: 192 TPGPSPMAPCSAGPDVLTL 210


>AF078783-2|AAK82901.1|  486|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 80, isoform a protein.
          Length = 486

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +1

Query: 1   TPGPQPPSPCNVRPCVKTV 57
           TPGP P +PC+  P V T+
Sbjct: 174 TPGPSPMAPCSAGPDVLTL 192


>AF106576-1|AAC78177.2|  664|Caenorhabditis elegans Hypothetical
           protein W07E6.1 protein.
          Length = 664

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 20/61 (32%), Positives = 27/61 (44%), Gaps = 3/61 (4%)
 Frame = +1

Query: 169 KKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLM---ADNGDLREDLKIPDGDLGTQ 339
           KK +      H  + P  + E  QL D  +DG   L    +D+ DLR+D    D D G  
Sbjct: 45  KKVKKSAKKAHEEE-PIEQVEKLQLIDDDEDGLEGLSFPGSDDEDLRDDYSDDDSDAGDH 103

Query: 340 L 342
           L
Sbjct: 104 L 104


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,842,620
Number of Sequences: 27780
Number of extensions: 285766
Number of successful extensions: 785
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 767
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 785
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1049512662
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)