Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31971
         (337 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13G6.07c |rps601|rps6-1|40S ribosomal protein S6|Schizosacch...    25   2.3  
SPAPB1E7.12 |rps602|rps6-2, rps6|40S ribosomal protein S6|Schizo...    25   2.3  
SPBC16A3.04 |rsm25||mitochondrial ribosomal protein subunit Rsm2...    25   4.1  
SPBC2A9.11c ||SPBC2D10.01c|nuclear export factor|Schizosaccharom...    24   5.4  
SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5 |Schizo...    24   5.4  
SPAC22A12.14c |||BSD domain protein, unknown biological role|Sch...    24   7.1  
SPBC1711.10c |npl4||Cdc48-Ufd1-Npl4 complex component Npl4 |Schi...    24   7.1  
SPAC2F3.13c |||queuine tRNA-ribosyltransferase |Schizosaccharomy...    24   7.1  
SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    23   9.4  

>SPAC13G6.07c |rps601|rps6-1|40S ribosomal protein
           S6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 239

 Score = 25.4 bits (53), Expect = 2.3
 Identities = 14/42 (33%), Positives = 19/42 (45%)
 Frame = -1

Query: 130 GEQSLPARDDVTVPLHDGGRLLVPRRHQLLFQRRDVLDPFVL 5
           GEQ +P   DVTVP   G +     R      + D +  FV+
Sbjct: 117 GEQDIPGLTDVTVPKRLGPKRASKIRRFFNLSKEDDVRQFVI 158


>SPAPB1E7.12 |rps602|rps6-2, rps6|40S ribosomal protein
           S6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 239

 Score = 25.4 bits (53), Expect = 2.3
 Identities = 14/42 (33%), Positives = 19/42 (45%)
 Frame = -1

Query: 130 GEQSLPARDDVTVPLHDGGRLLVPRRHQLLFQRRDVLDPFVL 5
           GEQ +P   DVTVP   G +     R      + D +  FV+
Sbjct: 117 GEQDIPGLTDVTVPKRLGPKRASKIRRFFNLSKEDDVRQFVI 158


>SPBC16A3.04 |rsm25||mitochondrial ribosomal protein subunit
           Rsm25|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 220

 Score = 24.6 bits (51), Expect = 4.1
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +3

Query: 192 ELYLTFAKKASAFNSWFENAEE 257
           +L L +    +A NSWF+NA +
Sbjct: 178 DLELGYEMDQNALNSWFDNASQ 199


>SPBC2A9.11c ||SPBC2D10.01c|nuclear export
           factor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 395

 Score = 24.2 bits (50), Expect = 5.4
 Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = +3

Query: 195 LYLTFAKKASAFNSWFEN-AEEDLTDPVRCNSIE 293
           LY+ F K  S  NS   N  EED T+    +++E
Sbjct: 250 LYMLFTKNRSEMNSLLANLKEEDKTNAAVTHALE 283


>SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1065

 Score = 24.2 bits (50), Expect = 5.4
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
 Frame = -1

Query: 109 RDDVTVPLHDGGRLLVPRRHQ--LLFQRRDVLDPFVLE 2
           RD+  +P+H+  +L     HQ  LL QR  V + F  E
Sbjct: 678 RDEKLIPIHEWQQLQERIEHQTLLLRQREKVPEQFAAE 715


>SPAC22A12.14c |||BSD domain protein, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 347

 Score = 23.8 bits (49), Expect = 7.1
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = -1

Query: 124 QSLPARDDVTVPLHDGGRLLVPRRHQ 47
           Q  P  DDV+ P H+    +   RH+
Sbjct: 113 QISPKEDDVSTPTHEASSSVFLNRHE 138


>SPBC1711.10c |npl4||Cdc48-Ufd1-Npl4 complex component Npl4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 545

 Score = 23.8 bits (49), Expect = 7.1
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -2

Query: 135 ESESSRCQRAMTSPCRFTMAGVC 67
           E E    +R+MTS CR    G+C
Sbjct: 128 EKEDGLIRRSMTSLCRHGPKGMC 150


>SPAC2F3.13c |||queuine tRNA-ribosyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 348

 Score = 23.8 bits (49), Expect = 7.1
 Identities = 8/11 (72%), Positives = 10/11 (90%)
 Frame = +2

Query: 176 VPTDRGTLPHL 208
           +PT RGT+PHL
Sbjct: 31  LPTSRGTVPHL 41


>SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1096

 Score = 23.4 bits (48), Expect = 9.4
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -3

Query: 221  SLFGEGEVEFLDLSELVLQLQQPLLT 144
            +LFG+G V+ L +  +++ L   LLT
Sbjct: 955  TLFGKGRVKDLGIQSVLIWLSHGLLT 980


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.128    0.379 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,002,212
Number of Sequences: 5004
Number of extensions: 14869
Number of successful extensions: 50
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 50
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 95984434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)