Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV31971
(337 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1382 + 26565137-26565210,26565330-26565468,26565489-265656... 28 1.6
11_06_0341 - 22507098-22507982,22508616-22508783,22518740-225188... 28 2.2
01_01_0947 - 7450144-7450503,7450637-7451023,7451955-7452251 27 3.8
01_01_0124 - 1145105-1145320,1145480-1145611,1146485-1146562,114... 27 3.8
08_02_1093 - 24271826-24273427 27 5.0
06_03_1195 + 28311450-28312294,28312418-28312966,28314319-28314499 27 5.0
12_01_0410 - 3234836-3234958,3235636-3235776,3235899-3235949,323... 26 6.6
10_08_0782 + 20517103-20519601 26 6.6
07_03_0658 - 20366559-20367562,20367745-20367937 26 8.7
01_03_0236 + 14061850-14062062,14062156-14062403,14062484-140628... 26 8.7
>08_02_1382 +
26565137-26565210,26565330-26565468,26565489-26565603,
26565761-26565828,26565907-26566551,26566927-26567031,
26567115-26567465
Length = 498
Score = 28.3 bits (60), Expect = 1.6
Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 3/48 (6%)
Frame = -1
Query: 148 LPGGGVG--EQSLPARDDVTVPLHDGGRLLVPRR-HQLLFQRRDVLDP 14
L GGG G ++ AR + P DG PRR HQ++ R P
Sbjct: 231 LRGGGAGARDRKATARAAIPAPRRDGAAAHAPRRLHQMMHDDRAAAAP 278
>11_06_0341 -
22507098-22507982,22508616-22508783,22518740-22518893,
22519396-22519728,22521106-22521374
Length = 602
Score = 27.9 bits (59), Expect = 2.2
Identities = 16/35 (45%), Positives = 25/35 (71%)
Frame = -3
Query: 332 LELRVRVLERAYLLDGVAAHGVRQVLLRVLEPRVE 228
LELR R+LE A+ ++ +A+ ++QVLLRV + E
Sbjct: 541 LELRFRILEGAHGVENLAS--LQQVLLRVSQQAPE 573
>01_01_0947 - 7450144-7450503,7450637-7451023,7451955-7452251
Length = 347
Score = 27.1 bits (57), Expect = 3.8
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = -1
Query: 142 GGGVGEQSLPARDDVTVPLHDGGRLL 65
GGG G ++ A DDV + LH G LL
Sbjct: 29 GGGGGVGAMDAADDVGLALHAHGALL 54
>01_01_0124 -
1145105-1145320,1145480-1145611,1146485-1146562,
1147022-1147199,1147269-1147441,1147531-1147632,
1147717-1147794,1148178-1148259,1148343-1148405,
1150196-1150275,1150529-1150723,1150812-1151073,
1151566-1151720,1151799-1151865,1151956-1152179,
1152322-1152451,1153228-1153284,1153396-1153527,
1153758-1154086
Length = 910
Score = 27.1 bits (57), Expect = 3.8
Identities = 16/46 (34%), Positives = 23/46 (50%)
Frame = -3
Query: 296 LLDGVAAHGVRQVLLRVLEPRVECRSLFGEGEVEFLDLSELVLQLQ 159
LL A H ++ R+ R F EG+ E+L S+LVL +Q
Sbjct: 810 LLSPFAPHMAEELWFRLGNSRSLAHEQFPEGKSEYLKESKLVLPVQ 855
>08_02_1093 - 24271826-24273427
Length = 533
Score = 26.6 bits (56), Expect = 5.0
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = -3
Query: 299 YLLDGVAAHGVRQVLLRVLEPRVECRSLFGEGEVEFLD 186
Y L G AA R VL + + CRSL+ +G V L+
Sbjct: 276 YSLGGGAAEQPRTVLAGLDGDMIHCRSLYMDGTVYLLN 313
>06_03_1195 + 28311450-28312294,28312418-28312966,28314319-28314499
Length = 524
Score = 26.6 bits (56), Expect = 5.0
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +2
Query: 17 IQNITSLKEQLVAAGHEQTPAIVKRHGDVIARW 115
+ N T+L + AAGH Q+ +V RHG I W
Sbjct: 133 LSNHTAL-DAAGAAGHTQSHVVVGRHGIRIRPW 164
>12_01_0410 -
3234836-3234958,3235636-3235776,3235899-3235949,
3236045-3236125,3236427-3236483,3236898-3236993,
3237204-3237379,3237630-3237703,3237909-3238016,
3238100-3238236,3238396-3238446,3239032-3239142,
3239291-3239363,3240322-3240398,3240641-3240706,
3241349-3241463,3242255-3242511
Length = 597
Score = 26.2 bits (55), Expect = 6.6
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = -1
Query: 136 GVGEQSLPARDDVTVPLHDGG 74
GVGE S P RD P GG
Sbjct: 17 GVGESSSPPRDPAAAPAASGG 37
>10_08_0782 + 20517103-20519601
Length = 832
Score = 26.2 bits (55), Expect = 6.6
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = +2
Query: 248 RGGGPDGPRALQLHRGDTRAQGRAR 322
R GG DGPR + R D RA+ R
Sbjct: 37 RSGGGDGPRIVDGGRDDRRARSSRR 61
>07_03_0658 - 20366559-20367562,20367745-20367937
Length = 398
Score = 25.8 bits (54), Expect = 8.7
Identities = 17/56 (30%), Positives = 30/56 (53%)
Frame = -3
Query: 317 RVLERAYLLDGVAAHGVRQVLLRVLEPRVECRSLFGEGEVEFLDLSELVLQLQQPL 150
RVL L+ VA HG+++ + L C+ LFG+G + ++ V +++PL
Sbjct: 190 RVLVACVELNVVAFHGLKEDYPQTLT----CQGLFGDGAGAVIVGADAVRPVERPL 241
>01_03_0236 +
14061850-14062062,14062156-14062403,14062484-14062811,
14062930-14063175
Length = 344
Score = 25.8 bits (54), Expect = 8.7
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = -3
Query: 284 VAAHGVRQVLLRVLEPRVECRSLFGEGEVEFLDLSELVL 168
VAA G V R + PR E + GE E+ +D L L
Sbjct: 13 VAADGGAHVPPRYIRPRDEAVATDGETEIPVIDFQRLQL 51
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.317 0.128 0.379
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,790,760
Number of Sequences: 37544
Number of extensions: 141624
Number of successful extensions: 554
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 550
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 554
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 471517020
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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