Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31968
         (628 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr 3||...    28   0.96 
SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   6.8  
SPBC1703.02 |rsc9||RSC complex subunit Rsc9|Schizosaccharomyces ...    25   6.8  
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb...    25   9.0  

>SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1315

 Score = 28.3 bits (60), Expect = 0.96
 Identities = 13/30 (43%), Positives = 21/30 (70%)
 Frame = -1

Query: 475  VKCLSVSSITFLNTNLKDFVFSFIEIVINL 386
            ++ ++VS +   N+NL DF F FI++VI L
Sbjct: 1080 IQFITVSILYTTNSNLGDFQFLFIDLVIIL 1109


>SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 682

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +2

Query: 194 NTHINIKYMYFLHGYQVSSQSDARFSNYNGTYVK 295
           NTH NI YM       V+S S  R++    +Y++
Sbjct: 298 NTHANISYMQSSQSMPVNSYSYDRYTPNQPSYLE 331


>SPBC1703.02 |rsc9||RSC complex subunit Rsc9|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 780

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 10/30 (33%), Positives = 20/30 (66%)
 Frame = +3

Query: 381 PFKFITISMNEKTKSFRLVFKNVIEDTDRH 470
           P   ITI  N+KT SF+  +K+++++ + +
Sbjct: 147 PTNPITIIDNDKTHSFKKFYKSLVKEDEEN 176


>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1919

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +3

Query: 402  SMNEKTKSFRLVFKNVIEDTDRHLTTLIYTV 494
            S  E   + R +   ++E  D   TTLIYT+
Sbjct: 1693 SKQELLAALRKLLSTMVEQNDHTCTTLIYTL 1723


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,417,516
Number of Sequences: 5004
Number of extensions: 47521
Number of successful extensions: 86
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)