Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31965
         (302 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB17E12.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    23   7.5  
SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C |Schizosaccharom...    23   9.9  
SPBC23E6.06c |||3,4-dihydroxy-2-butanone 4-phosphate synthase |S...    23   9.9  

>SPAPB17E12.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 311

 Score = 23.4 bits (48), Expect = 7.5
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +1

Query: 130 EII*NLIILKVNFIYCILCIRVY 198
           E I N  +L   F++C  CI+V+
Sbjct: 262 EKIKNPAVLSTGFVFCYPCIQVW 284


>SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1016

 Score = 23.0 bits (47), Expect = 9.9
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -3

Query: 207 LFLINSDTQDTINKIYF*NN*ISYYFKIPPQYK 109
           L L+N DT  TI+KI F    + +   +  QY+
Sbjct: 107 LDLLNYDTPLTISKISFLLQQLEFKLSVEEQYR 139


>SPBC23E6.06c |||3,4-dihydroxy-2-butanone 4-phosphate synthase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 204

 Score = 23.0 bits (47), Expect = 9.9
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +2

Query: 59  WGVKVIFIEKIYKFI 103
           WG+KVI IE +  +I
Sbjct: 186 WGIKVITIESLKSYI 200


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 718,196
Number of Sequences: 5004
Number of extensions: 9581
Number of successful extensions: 19
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 75747362
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)